Pygoscelis adeliae (Adelie penguin): 103916470
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Entry
103916470 CDS
T06012
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
padl
Pygoscelis adeliae (Adelie penguin)
Pathway
padl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
padl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103916470 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
padl03021
]
103916470 (PCF11)
03019 Messenger RNA biogenesis [BR:
padl03019
]
103916470 (PCF11)
Transcription machinery [BR:
padl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103916470 (PCF11)
Messenger RNA biogenesis [BR:
padl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103916470 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CFIA_Pcf11
CID
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
103916470
NCBI-ProteinID:
XP_009321730
LinkDB
All DBs
Position
Unknown
AA seq
1637 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSTEESTAPTSAVTSGASTPPAVPEI
QKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTIASVPAPS
KQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRMAQHSSHAKDQPH
RKEFPPNTASQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSEAKSKSPSPLKNK
LPNTKDTKTQECESTKVSEINKRDPRLKRHLQDKSEGKEEEVKEKRRSTEKKEKEEHKTC
EHRPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSSRKRSRSRSPKARSPSTHSPKRR
ERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSNKRNVKQEVRDPR
RVKKAQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENKNSQQSEEHQAL
GKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLTS
GEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELTYYEHKAK
LKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFDRKESFGERSRRH
SPVSGTNRPFADNLSPLESRRRLEEQNATKGARGSKNFDPYDSWGESDEFRDALRQQGKS
TTEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRTRYEDPEKAPFPESPGS
RFGGIEAKQRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAGSSSRIDGPPGQA
AMRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQVGGGGPLRFE
GPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEGPHGQPMGPRGQ
PGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPMGPHGP
SGGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDG
CHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQRFDGPHQPASRF
DLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPSHGMQFQRPDIFDGSP
GPNFNGPAGPGAQNFPLRAAGHYFDEKSLQGPQYGNFNNMPMGSNQVSLMSAQPGPYGQG
QQYLPNPGGFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNET
SAQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTD
VYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEV
VLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHP
SCYEDYQNTSSFDCTPSPSKTPAENPLNIMLNIVKQETQESCDSPKVKEEPDDTPTACAE
ESTPASTDIKTEPDESV
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgtgggaagagaatatcttactgcatttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctccacatgggatgatatttttcctttgaagaaactatatgca
cttgatgtcagagtcaactcattagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgacagaggaatcc
actgcacctacctctgctgtcacttctggtgcctctactcctccagctgttcctgaaata
caaaagaatttgacacaggagcaactgataaggcagcaattgcttgcaaagcaaaagcag
ttgttagaacttcagcaaaaaaaattagagctggagctggaacagactaaagcacagttg
gctgtatctcttagtgttcagcaaggatcatctactatagcttcagttccagcaccttcc
aagcaacacatgtctcccacacctcatatgacagtcaaaccacctcatcagactgctgtg
caatccgaaaaaaacaaaccatccccaagtcctccacttcatgatatcaaaatagtaaat
agggatcctcgacttaataggatggctcaacattcttctcatgctaaagatcaacctcat
aggaaggaatttccaccgaacacggctagtcagtctgataccaaggcaaataaaacaaca
caggctgaaaaacaaaattcaacaaagcaagaaaaattgaaagcaagtgaaaaaacacag
aagaaagaacttgaccagtcagaagcaaaatctaaatcaccatcccctttaaaaaataag
ctacccaatactaaagatactaaaacccaggaatgtgaaagcacaaaagtgtctgaaatt
aataagcgggatccaagactgaaaagacatcttcaagataagtcagagggcaaagaggag
gaggtgaaagaaaagaggagaagtacagagaaaaaagaaaaagaggaacataagacatgt
gaacatagaccagtaggcagcagaaataaagtaattaatggtgctgttcagaaacaagac
acgactacagaggagtcagaaaaacagggtggaaaacaagggagatcaagtagtagaaaa
cggtcacgatcacgctctcctaaggcacggtcaccatctacacattctccaaaaagacga
gaaaggagatcacctaaaagaagacttaggagtttatctcccacttcatcaactcctaaa
attggaaagatacgtcagataggccctaagcagtctcatgttgaagaaggcacgcaagca
gcaagagatgaaagaaattctaataagagaaatgttaaacaagaggtgcgagatccaagg
agagtgaaaaaagcccaagaagacaggccccaagaaacagcaagccagcattctacaaaa
gcttctcctgatccaaaggagaatgcggaaaactggcaaggatccaaatcaggcaagagg
tggaaatctggttgggaagaaaataaaaactcacagcagagtgaagaacaccaagcactt
ggtaaatcccctcaccaaagacacagggaaaactggcctgctggcaaaggaattttatca
ccccgagcaccaaagcagcagcaccggttaagtgtggatgctaatttacagattcccaaa
gaattgacatctgcaagcaagagagaattacttaagaaggccaatgaacgcttaacatct
ggcgaaataacacaagatgagttcctcatggtagctcatcagatccgacagctgttccag
tatcaggaaggaaagcacagatgtaatgtctgggatagccctacagaggaaaaatgtggt
ttgaaaaagaaacctcttctgtcggatgcagaattaacatactatgaacataaggctaaa
ctgaaaagaacacaagttcagcattcattgtcaaggcttgatcttttagatcctgatgat
attttggattatcatttgcctgatgcattgctttctggaatagaatgtgagcaagcaaaa
gccaagcgtggagtacagtttgacagaaaagaatcatttggagaaagatcaaggagacac
tctcctgtaagtggcactaatagaccttttgccgataacctctcaccacttgaaagtcga
cgaagacttgaggaacaaaacgctactaaaggagcaagaggttctaagaactttgatcct
tatgacagctggggagaatcagatgaatttagagatgctctcagacaacaggggaaaagc
acaacagagttccagaaaatagatggtgatgcaatctgcagatttgataatcgtgaagaa
agacagcttcttgggcaagctggtgttcgagaggaaccaagatcaccattcagtgaacgt
ttcaaaagaacaaggtatgaagatccagaaaaagcaccgtttccggaaagtccaggatca
agatttggaggcattgaagcaaagcagaggataagcgcattaatggaagacagacctcta
tttgatggctcacctagacaggctgctgcaagggttggggtagatggacaaggaagtcct
tttgttgatggtcctgctgctggttcaagttcaagaattgatgggccacctgggcaggct
gctatgagatttgaggggcctttggtgggggcaggtgcatctcagtttgatggaccactg
gcaggagcagggggagctggagccctaagatttgatgggccaccagggcagctggcaggg
gccctgaggtttgaaggacccccaggacaggttggtggaggaggtccactgaggtttgag
ggacctcttgggcagataggtgggcctttgcggtttgaggggcctgcagggcagcctgta
ggtggtcctagatttgaaggacctggagttggcctcaggtttgagggtccccgtggtcag
ccttcaggtggtctcaggtttgagggacctcatggtcaacctatggggcctcgaggtcaa
ccagggggtggtctcaggtttgagggaccccatggtcagcccttggggcctcatggtcaa
ccagggggtggcctcaggtttgaggggccacatttacagccactggggccccatggtcaa
cctggaggtggcctcagatttgaggggccacatggtcagcctatggggccacatggaccg
tcaggtggtgggctcagatttgaggggccacatggaccatcaggtggtggactcagatta
gaaggaccacatggtcagccaggtgtaggtcctaggttgattgatggaccagtgcaccag
ggagctggtggacttagatttgatggtcctctgggtcgggccggtccgagatttgatggt
tgtcatgcagctggatttgatggtcagcctggacagctgtctctcctgcaaagatttgat
ggaattcatggacagcctggtccaagatttgaaagggcgcctgggcaacaggcacaacca
cgatttgatacagccatacctcaaagatttgatggacctcaccagccagcctctagattt
gacttgccccttggccttcaaggtgcacgttttgaaaatgtagctaaccatcctgcctca
agactagaaatgtcaccatatggacaaggtggtccgtttgttgaacatcctggccagggc
tataatggaccatctcatgggatgcaattccagaggcctgatatattcgatggttcacct
ggaccaaatttcaatgggccagctggcccaggagcacagaatttcccattgagagcagct
ggacattactttgatgaaaaaagtcttcagggtcctcaatatgggaacttcaataatatg
ccaatgggaagtaatcaggtttctctcatgtctgctcaaccagggccttatggccaaggt
caacagtatttgccaaaccctggaggttttgttcagaaccctgcaggtgcccttccacat
tcatatcctgataaccaccttggacagcttgatgtcaatgaattgtttgctaaactgctg
tcaacagggatcctcaaactgtcaaaaactgattccacttcagcacaagtgaatgaaaca
tcagcccagccagctgctgaagaggaagatgatgaccagaatgaagatcaaaatgttcca
gacctcactaacttcacagttgaagaacttagacagcgttatgatagtgttataaatcgg
ctgtacactggaattcagtgttactcatgtggaatgagattcactacttcacagacagat
gtttatgcagatcatttagattggcattatcgtcagaaccggacagaaaaagatgttagc
agaaaaattacacacagaagatggtactacagtttaacagactggattgaatttgaagaa
atagccgatctagaggagcgtgcaaaaagccagttttttgaaaaagctcatgaagaggtt
gtgctgaagacacaagaagctgcgaaagagaaggagtttcagagtgtccctgctggacca
gctggagcagttgagagctgtgaaatttgccaagagcaatttgaacagtattgggatgag
gaagaggaagagtggcacctgaagaatgctatcagagtagatgaaaagatttaccatcca
tcttgctatgaagattaccaaaatacatcatcatttgattgcacaccatctcccagcaag
actcctgcagaaaatccactaaatataatgttgaacattgttaaacaagaaacacaagag
tcctgtgactcacctaaagtcaaagaagaacctgatgacacccctactgcctgtgcagaa
gagagcacacctgcatctacagatattaaaacagaacccgatgagtctgtttaa
DBGET
integrated database retrieval system
