Paenibacillus sp. FSL R5-0345: R50345_04800
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Entry
R50345_04800 CDS
T03333
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R50345_04800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paef03400
]
R50345_04800
Enzymes [BR:
paef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R50345_04800
DNA repair and recombination proteins [BR:
paef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R50345_04800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIQ34021
LinkDB
All DBs
Position
complement(1080471..1081418)
Genome browser
AA seq
315 aa
AA seq
DB search
MKLQPIIPFEPILAGQLPAGNQWIAQIKWDGVRMLSYYNGSTTQLINRRGNYRTAQYPEL
TDVSAYCKADSVILDGEIIALKDGKPSFHEVMRRDSLKNGSTISVVRHQVPVIYMIFDIL
FYNGQSPMDQPLSSRQQLLNDILLPHPHVQAVPSYTDPTELFAAAQSQSLEGIVCKDINS
TYAPGGKDKRWQKRKIISDLTAVAGGVTFRDGIVNALLLGLYDDKGNLHYIGHAGPGKLT
VQDKRDLTAEVQHLKIDQMPFTADPQRGKGAFWIKPKLVFKVHFLEWNTSGTLRQPVTQA
RVDLPPESCTMEQKG
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttcagcctattattccttttgaacctatactggctgggcagcttccagcaggc
aaccagtggattgcacagattaaatgggatggcgttcgaatgttgtcctattacaacgga
agcactactcagcttattaacagacgtggaaattaccgtacagcgcaatatcctgagctt
actgatgtatctgcttactgcaaggctgattccgttattcttgatggtgaaatcattgca
ctcaaggacggcaagccctcatttcacgaggtaatgcggagggacagcttaaagaatggc
tccaccatttccgtcgttaggcatcaggttcctgtcatttatatgatttttgatattctg
ttttataatggccaatcgccgatggatcagcctttatcctcacggcagcagctgctaaac
gatattctgctgccgcatccccatgttcaggccgtacccagttataccgatcccacagaa
ttattcgccgctgctcagagtcagagcttagagggaatcgtctgtaaggatatcaacagt
acttatgctcccggtggaaaagataaacgctggcagaaacgcaaaatcatttctgatctt
acggcagtagccgggggtgtaacgttccgagacggcatcgtcaatgcgctacttcttggg
ctgtatgatgataaagggaatttgcattatatcggacatgccgggccaggaaaattgact
gtacaggataaacgcgacttaactgcagaggtacagcatttaaaaatagatcaaatgccc
tttacagctgatccccagcgagggaagggtgctttttggataaaaccgaagcttgtcttc
aaagttcattttttggaatggaatacctcaggcactcttcgtcagccggttactcaagct
agggtagatcttcctcccgaatcatgtactatggagcaaaaaggataa
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