Paenibacillus sp. FSL H7-0357: H70357_05705
Help
Entry
H70357_05705 CDS
T03358
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paeh
Paenibacillus sp. FSL H7-0357
Pathway
paeh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H70357_05705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paeh03400
]
H70357_05705
Enzymes [BR:
paeh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H70357_05705
DNA repair and recombination proteins [BR:
paeh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H70357_05705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AIQ16231
UniProt:
A0A089HVZ3
LinkDB
All DBs
Position
complement(1243155..1244039)
Genome browser
AA seq
294 aa
AA seq
DB search
MPATIKGSITVAGQEITITNPDKPLWPEAGITKRIYLEKLAALSPYLLRYCRDRLLTVIR
YPHGISGMSFYQKNAPDPLPDFVRTAVQDKINYIVLQGLPELLWLGNLAALEFHPSLHYA
GSGLPCEWMIDLDPSLEVEPRIMEAAATVGEVLKSLGLASVPKTSGATGVQIIIPIRPGV
TFDDLRKIGHFVGRYVTEKRPDLFTLERLKKHRGDKIYFDYLQHYGGKTLAAPYTPRARP
LATVSTPLLWEEVQRNVSPADFHLLNIEERLSRMGDLIVGVPPQPVENIISRLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccggcaacaatcaaaggctccattactgtagccggacaagaaattacgataacgaac
cccgataaaccattatggcccgaggcagggattaccaaacggatctatctggaaaagctg
gccgcactctccccttatttactgcgctattgccgggaccggctgctgacggtaattcgc
tacccccacggcatttccggcatgtcgttttatcaaaaaaacgccccggaccccctgccg
gactttgtccgaacggcggtacaggacaaaatcaactatatcgtgcttcagggcttgccg
gagctgctctggctgggcaatctggctgcactggagtttcacccttccctgcattatgcg
ggaagcgggcttccctgtgaatggatgattgatcttgatccctcccttgaggtggagccg
cggatcatggaagcggccgccactgtcggtgaagtgctgaaatcgctgggactggcttcc
gttccgaagacttcgggggccacaggtgtgcagatcatcattcctatccggcctggtgtt
actttcgatgacttgcgcaagatcgggcattttgtgggacgttatgtcaccgagaaacgt
cccgatctgttcaccctggagcggctgaagaaacaccgcggcgacaaaatttattttgat
tatcttcagcactacggaggcaaaacccttgccgctccttatacaccgcgtgccagaccg
ctggccactgtttctactcccctcttatgggaagaggtgcagcgcaatgtctcccctgca
gattttcatctgctgaatattgaggaacgcctcagccgcatgggcgatttaattgttggt
gtaccgcctcagccggtagagaacattatctcccggctcccttga
DBGET
integrated database retrieval system
