Paenibacillus sp. FSL P4-0081: P40081_06070
Help
Entry
P40081_06070 CDS
T03332
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paen
Paenibacillus sp. FSL P4-0081
Pathway
paen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P40081_06070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paen03400
]
P40081_06070
Enzymes [BR:
paen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P40081_06070
DNA repair and recombination proteins [BR:
paen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P40081_06070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIQ27806
UniProt:
A0A7U4KHU7
LinkDB
All DBs
Position
complement(1372484..1373431)
Genome browser
AA seq
315 aa
AA seq
DB search
MQPVIPFEPVLASRLPEGEEWIAQIKWDGVRMLSYYDGSHAELINRRGNRRTLQYPELAR
PEAYCRAGSVILDGEIIALSGGKPSFHEVMRRDSLKNEAAIRAVSPQVPVLYMVFDILYC
NGIWLLDQPLSRRRQMLSEMLLPHPHVQNVPSYHQPAQLYAAALKGGLEGIVCKELTSTY
APGGKDKRWQKCKIISDVTAVAGGVTFRDGLVNALLFGLYDDAGKLHYIGHAGAGKMTVQ
DWRNLTAQISGMITEQMPFAELPQRSKGSVWIKPELVFKLHYLEWNTSGTFRQPVIQSQV
ELPPLSCRMDQRTQT
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
ctgcagccggttattccattcgagcccgtgctggcctccaggctcccggagggcgaggag
tggatcgcccagatcaaatgggatggcgtgcggatgctctcctattacgatggaagccat
gccgagctgatcaaccggcggggcaaccggcgcacgctgcagtatcctgagcttgccaga
ccggaggcgtattgccgggccggttccgtcattctcgatggtgagattattgcgctcagc
ggcggcaagccctccttccatgaggtgatgcggagggatagcctgaagaatgaagcagcg
atccgggcggtaagcccgcaggtgccggtgctctacatggtcttcgatatcctgtactgc
aatggcatttggctgctggaccagccgttgtcccggcggcggcagatgttaagtgaaatg
ctgctgccccatccccatgtgcagaatgtgccaagctaccatcagcccgcacagctgtac
gctgccgctctgaagggcgggctggaggggattgtatgcaaagagctcaccagtacctat
gccccgggaggcaaggacaagcgctggcagaaatgcaaaatcatctccgatgtcactgct
gtagccggcggcgtcaccttccgtgacggtctggttaacgccctgctcttcggactgtat
gatgatgcaggtaagctgcactatatcggccatgcaggagcgggcaaaatgaccgtacag
gactggcggaatttgaccgcacagatcagcggcatgatcacagagcagatgccttttgca
gagctgccccagcgcagtaaaggctcggtctggattaagcctgagctggtgttcaagctg
cactatctggaatggaatacttccggaaccttccgccagccggttatacaatcccaggta
gagctccctccgctgtcctgccgcatggaccagagaacacagacgtag
DBGET
integrated database retrieval system
