Pantoea agglomerans C410P1: BEE12_03940
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Entry
BEE12_03940 CDS
T04739
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pagc
Pantoea agglomerans C410P1
Pathway
pagc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pagc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BEE12_03940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagc03021
]
BEE12_03940
Transcription machinery [BR:
pagc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BEE12_03940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
PAC1
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AOE39092
LinkDB
All DBs
Position
901745..903586
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AA seq
613 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLNENSSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLDQYDKVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSEADRKDDEEEDEEDDDSSDDDNSIDPELAREKFSDLRKQYETTRAVIKSKGR
SHAAAVAEIQNLSDVFKQFRLVPKQFDYLVGSMRTMMERVRTQERLIMKLCIELCKMPKK
NFITLFTGNETNETWFKAALAMNKPWSEKLLEVQDDVTRSLQKLAQVEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESL
RSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactcagatcag
atcgaagacatcatccagatgattaacgacatgggtattcaggtggttgaagaagccccg
gatgccgacgatctgatgctgaacgaaaacagctccgatactgacgaagatgccgcggaa
gctgccgctcaggtgttatccagcgttgaatctgaaatcgggcgtaccactgacccggtc
cgcatgtatatgcgtgaaatgggtaccgttgaactgctgacgcgcgaaggcgaaattgac
atcgctaagcgtattgaagacggtatcaaccaggttcagtgttctgtagccgaataccct
gaagcgattacgtatcttctggatcagtacgacaaagttgaagcaggcgaatcacgcctc
tccgatctgatcaccggtttcgtcgatcctaacgcagaagaagatatcgccccaacggca
acgcacgtgggctctgaactttctgaagccgatcgtaaagacgatgaagaagaagatgag
gaggatgatgacagctccgacgacgataactcaatcgatccggaactggcgcgcgagaag
ttttctgacctgcgtaagcaatatgaaactacccgcgcagtgattaaaagcaaaggtcgc
agtcatgctgccgccgttgctgaaatccagaacctctctgatgtcttcaagcagttccgc
ctggtaccgaagcagttcgattacctggtaggcagcatgcgcaccatgatggaacgcgtc
cgtacgcaggaacgtctgatcatgaagctctgtattgagctgtgcaaaatgccgaagaaa
aacttcatcacgctgtttaccggcaacgaaaccaatgaaacctggttcaaagccgcactg
gccatgaacaaaccgtggtctgaaaagctgctggaagtgcaggatgacgtgacacgttcc
ctgcagaaactggcgcaggttgaagaagagaccggtctgaccattgaacaggtcaaagac
attaaccgtcgcatgtcgatcggtgaagccaaagcacgtcgcgccaagaaagagatggtg
gaagctaacctgcgtctggttatttcgattgccaagaaatataccaaccgcggtctgcag
ttccttgacctgattcaggaaggtaatatcggcctgatgaaagcggtagataagtttgaa
tatcgccgtggttacaagttctcgacttatgcgacctggtggattcgtcaggctatcacc
cgctctatcgccgaccaggcgcgtaccatccgtattccggtgcatatgattgagaccatc
aacaagctcaaccgtatttcacgccagatgctgcaggagatgggccgcgaacccacgccg
gaagagctggccgaacgtatgctgatgccagaagataaaatccgcaaggtgctgaaaatc
gctaaagagccgatctccatggagacgccgattggtgatgatgaagattcacatctgggc
gattttatcgaagacaccacgctggagctgccgctggattctgctacctcagagagcctg
cgttctgcgacccatgacgtgctggctggcctgaccgcgcgcgaagcgaaagtgctgcgc
atgcgtttcggtatcgatatgaacactgaccatacgctggaagaagtgggcaaacagttc
gacgttacgcgtgagcgtattcgtcagattgaagccaaagctctgcgtaaactgcgccat
ccgagccgttcggaagtgctgcgcagcttcctcgacgattaa
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