Pantoea agglomerans C410P1: BEE12_14360
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Entry
BEE12_14360 CDS
T04739
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pagc
Pantoea agglomerans C410P1
Pathway
pagc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pagc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BEE12_14360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pagc03400
]
BEE12_14360
Enzymes [BR:
pagc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BEE12_14360
DNA repair and recombination proteins [BR:
pagc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BEE12_14360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOE40933
LinkDB
All DBs
Position
complement(3147258..3150701)
Genome browser
AA seq
1147 aa
AA seq
DB search
MPEQTRYTLPVKSGDHRQLGQLIGAAHAVECASITERHAGPVLMITPDTQTALRLLDEIR
QFTDLPVAHLADWETLPYDSFSPHQDIISARLSTLYQLPVMQRGMLIMPVNTLMQRVCPH
SFLHGHALVMKQGQKLSRDRLRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RIDFFDDEIDSLRLFDVDSQRTLEAVPEINLLPAHEFPSDKAAIELFRSRWRETFDVRRE
SEHVYQQVSKGTLPAGIEYWQPLFFEQPLPSLFSYLPDNTLIVNCGDLEGSASRFWQDAE
ARYENRRVDPMRPLLEPVTLWLRPDALMGELKAWPRIQMTNEVLPAKAANTNLGYTPLPD
LTVQAQAKAPLDHLRQFIETFSGTVVFSVESEGRRESLQDLLARIKLRPQPVHRFDETGE
ERFRLMIGASERGFIDTQGNRALICESDLLGERVSRRRQDTRRTINPDILIRNLAELHPG
QPVVHLEHGVGRYIGLTTLEAGGIEAEYLMLSYANDAKLYVPVSSLHLISRYAGGADDNA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKTGFAFKHNREQYQLFCESFPFE
TTPDQAQAINAVLSDMCEPLAMDRLVCGDVGFGKTEVAMRAAFLAIENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRTAKEQAQVLEQASDGKIDILIGTHKLLMSDLKW
HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREFDDLVIREAILREVLRGGQVYYLYNDVENIEKAAQRLSELVPEARVAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKSMTADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
DEQSGQMETLGFTLYMELLENAVNALKAGREPSLEDLTSNQTEVELRMPALLPETFIPDV
STRLSLYKRIASAEAEEELQELKVEMIDRFGLLPDPARNLLDVAIIRLKARAVGLRKIEA
SDKGGYFDFAPKNNVDPAWLIGLLQKEPQQWKLDGPTRLRFTRELSERKVRLEWVQGFVS
QLAQRQA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacagactcgttataccctgcccgttaaatccggcgatcaccgtcagctcggc
cagctcataggcgcggcgcacgcggtggagtgtgccagcattaccgaacgacatgctggt
ccggtgttaatgattacacccgacacccaaaccgctctgcgtctgctggatgaaatccgc
cagtttaccgatctgccggtggcgcaccttgccgactgggaaacgctgccctacgacagc
ttttcgccgcatcaggatattatctccgcccgcctgtcgaccctctaccagttgccggtg
atgcagcgcggtatgctgatcatgccggtcaacaccctgatgcagcgcgtctgcccgcac
agtttcctgcacggccatgcgctggtgatgaagcagggacaaaaactgtcacgcgaccgg
ctgcgcgaccagcttgagcaggccggctatcgccatgtcgatcaggtgatggagcacggt
gaatacgctacgcgcggcgccctgctcgacctgttcccgatgggcagcgatcagccctac
cgcatcgactttttcgatgatgagatcgacagcctgcgcctgttcgatgtcgacagtcag
cgcacgctggaagcggtccccgaaattaacctgctgcctgcgcatgagtttcccagcgac
aaagccgccattgagctgttccgcagccgctggcgtgaaacgtttgatgtgcgccgtgag
tcggagcatgtctatcagcaggtcagcaaaggcacgctgccagcgggcatcgaatactgg
cagccgctgttttttgagcagccgttacccagcctgttcagctatctgcccgacaatacc
ctgattgtgaactgtggcgatcttgaaggcagcgccagccgcttctggcaggatgccgag
gcgcgttatgaaaatcgccgcgttgatccgatgcgtccactgctggagccggtcaccctg
tggctgcgtccggatgcattaatgggagagctgaaagcctggccgcgcatccagatgacc
aatgaggtgctgcccgccaaagccgcgaataccaacctcggctataccccactgcctgat
ctgaccgttcaggcgcaggcgaaagcgccgctggatcatctgcgtcagtttattgagacc
ttcagcggcaccgtggtcttctcggtggaaagtgaaggccgccgtgagagcctgcaggat
ctgctggcacggattaaactgcgtcctcagccggtgcaccgcttcgatgaaaccggcgaa
gagcgtttccgactgatgatcggcgccagcgagcgcggttttatcgatacccagggcaac
cgggcgctgatttgcgaaagcgatttgctgggcgaacgcgtcagccgtcgccgtcaggat
acccgtcgcactatcaatccggacattctgatccgtaacctggcggagctgcatcctggc
cagccggtggtgcatctggaacacggtgtgggtcgttatatcggcctcaccacactggaa
gccggcggcattgaggcggaatatctgatgctctcttacgccaacgacgccaaactttat
gtgccggtttcatcgctgcacctgatcagccgctacgcgggcggtgctgacgataatgca
ccactgcacaaactgggcagcgatgcctggtcgcgcgcacggcagaaagcggctgagaaa
gtgcgtgatgtggcggctgaactgctggatatctatgctcagcgcgccgccaaaaccggc
tttgcctttaagcataatcgcgagcagtatcagctgttctgcgaaagcttcccgtttgaa
accaccccggaccaggcgcaggcgatcaacgcggtgctgagtgatatgtgcgagccgctg
gcgatggatcgtctggtgtgcggcgacgttggtttcggtaaaaccgaagtggccatgcgc
gcggcgtttctggcgattgagaaccataaacaggtggccgtgctggtgccgaccaccctg
ctggcacagcagcattacgataacttccgcgatcgcttcgccaactggccggttcgcatt
gagatgctttcccgtttccgtactgccaaagagcaggcgcaggtgctggaacaggccagc
gatggcaagatcgacatcttaatcggcacccataagctgctgatgagcgatctcaaatgg
cacgatctcggtctgctgattgtcgatgaagagcaccgtttcggcgtgcgtcacaaagag
cgcatcaaggcgatgcgcgccgatgtggacattctgacgctgaccgcaacaccaatccct
cgcaccctgaatatggccatgagcggcatgcgcgatctctcgatcatcgccacgccacct
gcccgccgtttagcggtgaaaacctttgtccgtgaatttgacgatctggtgatccgcgaa
gcgatcctgcgtgaggttctgcgtggcggacaggtctactacctctacaacgacgtagaa
aatatcgagaaagcggcgcagcgtctcagcgaactggtgccggaagcgcgtgtcgctatt
ggtcatggtcagatgcgtgagcgtgatctggaacgggtgatgaacgatttccaccatcag
cgtttcaacgtgctggtctgtaccaccattatcgaaaccggtatcgacattccgaccgcc
aataccatcatcatcgagcgggccgatcactttggcctggcgcagttgcatcagctgcgt
ggtcgcgtcgggcgctcgcatcatcaggcttatgcctggctgttaacaccgcatccgaag
tcgatgaccgccgatgcgcataagcggctggaggcgatcgcttcgctggaagatctggga
gccggttttgccctggcaacgcatgacctggagattcgcggtgctggcgaactgctgggt
gatgagcagagcggacagatggagacgctgggcttcacgctttatatggagctgctggag
aatgcggtcaatgcactgaaagcgggtcgcgagccgtcactggaagatctcaccagcaac
cagaccgaggtggagctgcggatgcccgccctgctgcccgagacctttatcccggatgtc
agtacccgtctttcactctataaacgcatcgccagcgcggaggctgaagaggagctgcag
gagctgaaggttgagatgatcgaccgctttggcctgctgcccgatccggcgcgtaacctg
ctggatgtggcgattatccggctgaaagcccgcgctgtcggtctgcgtaagatcgaagcc
agcgacaaaggcggttatttcgattttgcgccgaagaacaacgtggatccggcatggctg
ataggcctgctgcagaaagagcctcagcagtggaagctggacggtccgacacgactgcgg
tttacccgtgagctatcggaaagaaaggtacgacttgagtgggtgcagggattcgtttcg
caactggctcaacggcaggcgtaa
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