Populus alba (white poplar): 118044382
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Entry
118044382 CDS
T07314
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118044382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118044382
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118044382
Spliceosome [BR:
palz03041
]
Complex C
Other components
Step II factors
118044382
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
S1
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
TsaE
ABC_tran
PhoH
AAA_16
T2SSE
Flavi_DEAD
ATPase
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
118044382
NCBI-ProteinID:
XP_034908546
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MVAAAENDAGLKKLEYLSLVSKVCSELETHLGFGDKILAEFITELGRSCDTVDEFDAKLK
ENGAEMPDYFVRTLLTIIHAILPPKAEKEAKKDMESDGSGKDSKFKALSIQDSRDRVKEI
DKELEIEAKEKSRRENEERHRERDAEDKHGRTDRRDGDRDRYRDRYDTRRDRERRREGYD
REDGXRERERRNVRHGYDREDGGGEKERRNVRHGYDREGGEGERERRNVRHGYDREDGEG
ERERRNVRQGYGGGNSNELELYGVYKGRVSRVMDTGCFVQLSDFRGKEGLVHVSQIATRR
LGNAKDAVKRDQEVYVKVISISGNKLSLSMRDVDQDSGKDLLPLKKRDEEDGFRSNALGS
SKEGPVTRTGLSGIRIVEEEEDTGPSRRPLKRMSSPEKWEAKQLIASGVLSAQEHPMYDD
EVDGFLYQEEGVEEELEIEMNEDEPAFLQGQTRYSVDVSPVKIFKNPEGSLSRAAALQSA
LIKERREVRDQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKD
AFGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQAIHENQVLVVIGETGSGKTTQVTQYL
AEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMT
DGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKKLVKRRPDLRLIVTSATLDA
EKFSGYFFNCNIFTIPGRTFPVEIMYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTG
QEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPVPPGKRKVVVATNIA
EASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRGGRTGPGKCYRL
YTESAYRNEMSPTSVPEIQRVNLGFTTLTMKAMGINDLLSFDFMDPPSPQALISALEQLY
SLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCTDEILTIISMITTGNIFYRPR
EKQALADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQL
LSIMDKYKLDVVSAGKNFTKIRKAIAAGFFFHVARKDPQEGYRTLVENQPVYIHPSSALF
QRQPDWVIYHELVMTTKEYMREGTVVDPKWLVELAPRFFKVADPTKMSKRKRQERVEPLY
DRYHEPNSWRLSKRRA
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggtagccgcagctgaaaacgacgccggattgaagaaactcgagtacctctccctcgtc
tccaaggtctgcagcgaactcgaaactcacttagggtttggcgataaaatcctagctgag
ttcatcaccgagttaggtcggagttgcgacacagtagatgagttcgacgccaaactgaag
gaaaacggagctgaaatgcctgattactttgtacggacattgctgacgattattcacgcg
attttgccgcctaaagcggagaaggaggcgaaaaaggatatggagagcgatgggtcaggt
aaagattctaaatttaaagctctttcgattcaagatagcagagacagagtgaaagaaatt
gataaggaattggaaattgaagctaaagagaaaagtagaagagagaatgaggaaaggcat
agagaaagagatgccgaagataaacatggaaggacagataggagggatggagatagggat
agatatagagataggtatgatacgaggagagatagagaaagaaggagagaggggtatgat
agagaggatggtngaagggagagggagagaagaaatgtgagacacggttatgatagagag
gatggtggaggcgagaaggagagaaggaatgtgagacacggttatgatagagagggtggt
gaaggtgagagggagagaaggaatgtgagacacggttatgatagagaggatggtgaaggt
gagagggagagaaggaatgtgagacaagggtatggtggtgggaatagtaatgagctggaa
ttgtatggggtttataaggggagggtgtccagggtgatggatacgggttgttttgtgcag
ttgagtgattttagggggaaggagggtttggttcatgtttcacagattgcaactaggaga
cttgggaatgcgaaggatgctgtgaagagggatcaggaggtttatgttaaggtgatttcg
atttcagggaacaagttgagtctttcgatgagggatgttgatcaggatagtgggaaggat
ttgcttcccttgaagaagcgggatgaggaggatggttttaggagtaatgctttggggtca
tctaaggaggggccagtgactaggacagggttgtcagggattaggatcgtggaggaggag
gaggatactggtccatcaaggaggcctttgaagagaatgagctctccagagaagtgggaa
gcgaaacagttgattgcttcaggagttttgagtgcgcaagagcaccccatgtatgatgat
gaagtagatgggtttctttatcaagaagagggagttgaggaagagcttgagattgagatg
aacgaggatgagcctgcatttttgcaagggcagactaggtattctgttgatgtgtcacca
gtgaagatttttaagaatcctgaaggttcgctaagtcgtgcagctgctcttcagtctgca
cttataaaggagaggagagaagtgagggaccagcagcagaggactatgcttgattcgata
ccaaaggatcttaatcgtccttgggaagacccaatgcctgagactggtgagaggcatctt
gcccaggagctgcgtggtgttggcttatctgcttatgacatgcctgaatggaagaaggat
gcatttgggaaagcattgacgtttgggcagagatccaagctatctatccaggaacagagg
cagagcttgccaatttacaaattgaaaaaagagttaattcaggctatccatgaaaatcag
gttttggttgttattggtgagacaggttcaggcaagactacccaggtgacacagtatctt
gctgaggcaggctacactacaaggggtaagatcggatgtactcagcctcgtagggtggct
gctatgtctgtagccaagagggtggctgaagagtttggttgtcgtttaggtgaggaagtt
ggctatgctattcgttttgaggattgcactggaccagatactgtgatcaagtatatgaca
gatggtatgcttcttagggagattttgattgatgaaaacctttctcaatactcagtgata
atgcttgatgaggctcatgagagaacaattaacactgatgtcctttttgggttactcaag
aaacttgtgaagagaagacctgatcttcgcttgattgtcacgtcagccacactggatgca
gagaaattttcggggtatttcttcaactgtaacatattcacgattcctggtagaactttt
cctgtagagataatgtacaccaaacagcctgaaagtgactatttagatgcgtctctgatt
actgtcttgcaaatccacttgacggaacctgaaggtgatatacttctattcttgacaggt
caggaggagattgattttgcatgccagtctctttatgagaggatgaaagggttaggaaaa
aatgttcctgaattgatcatattacctgtttatagtgctcttcctagtgaaatgcaatca
agaatttttgaacctgtcccccctgggaagaggaaggtggttgtggcaaccaatattgct
gaagcctctttaacaattgatggaattttttatgttattgatcctgggtttgccaagcag
aatgtgtataatccaaagcaagggcttgattctctggttataacaccaatttcgcaagca
tctgccaagcaacgagctggacgtggtgggcgtactgggcctggaaaatgttatcgtctc
tacacagaaagtgcataccgcaatgagatgtctcccacctcggttccagaaatccaaaga
gttaatctaggattcactacacttacaatgaaggccatgggaatcaatgaccttttgtct
tttgattttatggatccgccttcaccccaggccctgatttctgctttggaacagctatat
agccttggagccctggatgaggaaggacttctgaccaaactagggaggaaaatggcagaa
tttcctctggaaccaccattgtcgaaaatgttgctggccagtgtagaccttgggtgcacc
gatgagattttaactattatttccatgatcactactggtaacatcttttacagacccaga
gaaaaacaagcgctggctgatcagaagagggccaagtttttccagcctgagggagaccat
ctgactttgcttgctgtatatgaggcttggaaagccaagaatttttcaggaccttggtgt
tttgagaactttgtccaatctcgatccttgaggagagcgcaggatgtcagaaaacagctt
ctaagcataatggacaagtataaattggatgttgttagtgctgggaagaattttaccaag
ataaggaaagcaattgcagctggattctttttccatgtggccagaaaggacccgcaggag
ggttataggactttagttgagaaccagccagtttatatccaccccagcagtgcacttttc
cagagacaaccggactgggtcatataccacgagctggtaatgactacaaaggagtacatg
cgtgagggcacagttgtagatcccaaatggctcgtggaacttgctcccagattctttaaa
gtggcagatcctacaaaaatgagcaagcgaaagcgtcaagaacgcgttgaacctctctat
gatagatatcacgaaccaaattcatggcggttgagtaaacggcgagcttga
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integrated database retrieval system
