Pantoea ananatis LMG 20103: PANA_3129
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Entry
PANA_3129 CDS
T01195
Symbol
recJ
Name
(GenBank) RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pam
Pantoea ananatis LMG 20103
Pathway
pam03410
Base excision repair
pam03430
Mismatch repair
pam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PANA_3129 (recJ)
03430 Mismatch repair
PANA_3129 (recJ)
03440 Homologous recombination
PANA_3129 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pam03400
]
PANA_3129 (recJ)
DNA repair and recombination proteins [BR:
pam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PANA_3129 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PANA_3129 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PANA_3129 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ADD78296
UniProt:
D4GLP3
LinkDB
All DBs
Position
complement(3514190..3515929)
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AA seq
579 aa
AA seq
DB search
MVKHEVELRRREAVADLPGLPADLPPLLRRLYLQRGVTNAAELERGAKNLLPFSALSGID
KAVNLLHQALLDGRCIMVVGDFDADGATSTALTVLALRSMGCSNVQYLVPNRFEDGYGLS
PEVVEQARARGAEMILTVDNGISSHAGVALAHQHGIAVLVTDHHLPGETLPDADAIVNPN
LPDCHFPSRSLAGVGVAFYLMMALRAHLRTQGWFGVTRSEPNLADLLDLVALGTVADVVP
LDANNRILVWQGLSRIRAGKCRPGIKALLEIANRDARQLAASDLGFALGPRLNAAGRLDD
MSVGVALLLTDDLSQSRMLASELDALNQMRKEIEQGMQSEALALCQKLENEQTDLPLGLA
FYHPEWHQGVVGILASRLKERFHRPVIAFAPAGDGMLKGSGRSIAGLHLRDALERLDTLH
PGLMQKFGGHAMAAGLSLEEARYDEFRQRFADLVGEWLAGEALQGVIWSDGALQPAEFSL
QTAEVLRDAGPWGQSFPEPAFDGRFRLLQQRLVGERHLKVMVEPLEGGPLIDGIAFNVDT
TLWPDSSVRQVELAYRLDINEYRGNRSVQLIIEHLWPLS
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
gtggtaaagcacgaagtcgagttacgtcgccgtgaagcggtagccgatttgccggggcta
ccggcagatttaccgccgctcctgcgtcggctttatctgcaacgtggcgtcaccaacgcc
gccgagctcgaaaggggcgcgaaaaacctgctccctttcagtgcactgagcggcatagac
aaggccgttaacctgcttcatcaggcgctgctggatggccgctgcattatggtcgtcggg
gatttcgacgctgacggtgccaccagtaccgctctgacggtgctggcgctgcgcagcatg
ggatgcagcaacgtacagtacctggtgcccaatcgtttcgaagatggctacggcctgagt
ccggaagtggttgagcaggcccgcgcgcgcggtgcagagatgattctgaccgtcgataac
ggcatttcgtcccatgcgggtgtggcgcttgcgcatcagcacggcattgcggtgttggtg
accgaccaccacttaccgggcgaaacgctgcctgacgccgatgctatcgttaatcccaac
ctgcctgactgtcatttcccctctcgttcgctggcgggcgtgggcgtcgctttctatctg
atgatggccctgcgcgcccacttgcgcactcagggctggtttggcgtcacgcggtcggaa
cccaatctggccgacctgctcgatctggtggcgttgggcacggtggcagatgtggtgccg
ctggacgccaacaaccgcattttagtgtggcagggcctgagccgtattcgggccggaaag
tgccgtccgggcatcaaggccctgctggaaatcgccaaccgcgatgcccgacagctggcc
gccagcgacctgggttttgccctggggccccggcttaacgctgccggtcggctggacgat
atgtctgtcggcgtggcgctgttactgaccgacgatctcagccagtcgcgcatgttagcc
agcgaactggatgcgcttaaccagatgcgcaaagagattgagcaggggatgcagagcgag
gcactggcgttatgccaaaagctggagaacgagcaaaccgatttgccgctggggctggcc
ttttatcatcctgagtggcatcagggcgtggtcgggattctggcttcccgcctgaaagag
cgttttcatcgcccggttattgccttcgcaccggccggtgatggcatgctgaagggatcg
ggacgatcgattgccggtctgcatctgcgcgatgcgctggagcgtcttgatacgttgcat
cctggcctgatgcagaagtttggtggtcacgcgatggccgccggactgtcgctggaagaa
gcccgctacgacgagtttcgtcagcgttttgcggacctggtgggcgaatggctggccggc
gaagcgttgcagggcgtcatctggtcggatggtgccctgcagcccgctgaattttctctt
cagacggcggaagtgctgcgtgatgccggcccatggggccagtctttccctgagcccgct
ttcgacggccggttcaggctactgcagcagcgcctcgttggtgaacgtcacctgaaggtc
atggttgaacctctggagggcggaccgctgatcgacggtatcgcgttcaacgtggatacc
acgttgtggcctgacagcagcgtgcgccaggtcgaactggcctatcggcttgatatcaat
gagtatcgcggcaatcgatccgtccagctgatcattgaacatctctggccgctcagttag
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