Pseudomonas amygdali: BKM19_009965
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Entry
BKM19_009965 CDS
T05354
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pamg03009
]
BKM19_009965
Enzymes [BR:
pamg01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
BKM19_009965
Ribosome biogenesis [BR:
pamg03009
]
Prokaryotic type
ribosomal protein modification factors
BKM19_009965
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
AVB13893
LinkDB
All DBs
Position
complement(1921241..1922584)
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AA seq
447 aa
AA seq
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MSTVTTPSAPKVGFVSLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDT
AKAESLEVIGEAIKENGKVIVTGCMGVDANVIRDVHPSVLSVTGPQQYEQVVNAVHDVVP
PRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSMGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKILKLMKRPAFEDKTLARIKNWREQCPD
LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVK
QDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAVGRCFFDAPEIDGNVFIGLEE
GSTVQPGDKIMCRVTDADEYDLWAEML
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgtcaccacgccgtccgccccaaaggtcggattcgtttcactgggttgcccg
aaggcactcgttgattccgaacgcatcctgacccagctgcgcatggaaggttacgaagtc
gttgcgacctacgaggatgccgacgtggtcgtggtcaatacctgcggcttcatcgacacc
gccaaggccgagtcgctggaagtgatcggcgaagcaatcaaggaaaacggcaaggtcatc
gtgaccggctgcatgggcgttgacgcaaatgtcattcgcgatgtgcaccccagcgtgctg
tcggtgaccggcccgcagcagtacgaacaagtggtcaacgcagtgcacgatgtcgtgccg
ccccgcaaggaccacaatccgctgatcgacctggtgccaccgcaaggcgtcaagctgacc
ccgcgccactacgcgtatctgaaaatttccgaaggctgcaaccatagctgcagcttctgc
atcatcccgtcgatgcgcggcaagctggtcagccgtccggttggcgatgtactggatgag
gccaagcgtctggtcaaatccggcgtgaaggagctgctggttatttcccaggacaccagc
gcctatggcgttgacgtcaaataccgcaccgggttctgggacggccagccggtcaagacc
cgcatgaccgagctgtgccaggcgctgggttcgatgggcgtctgggttcgcctgcattac
gtttacccgtacccgcacgtcgacgaactgattccgctgatggcggccggcaagatcctg
ccgtacctggacatcccgttccagcacgccagcccgaaaatcctcaagctgatgaagcgg
ccagcctttgaagacaagacactggcacgcatcaagaactggcgcgagcagtgtcctgat
ctgattatccgctcgacattcatcgtcggctttcccggtgagaccgaagaagacttccag
tacctgctggactggctgaccgaagcccaactggaccgcgtcggctgcttccagtattcg
ccggttgaaggtgctcctgccaatctgctggatgcggccatcgtgccggatgacgtcaag
caggaccgctgggatcgcttcatggctcatcaacaggcaatcagcgctgcgcgcctgcaa
atgaagatcggcaaggaaatcgaagtactgatcgacgaagtcgatgatcgtggcgccgta
ggccgctgcttcttcgatgctccggaaatcgacggcaacgtgttcatcggtctggaagag
ggcagcaccgttcagccaggcgacaagatcatgtgccgcgttaccgatgctgacgaatac
gacctgtgggccgagatgctgtaa
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