Profundibacter amoris: BAR1_17815
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Entry
BAR1_17815 CDS
T06831
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pamo
Profundibacter amoris
Pathway
pamo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pamo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BAR1_17815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamo03400
]
BAR1_17815
Enzymes [BR:
pamo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BAR1_17815
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BAR1_17815
DNA repair and recombination proteins [BR:
pamo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BAR1_17815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AXX99626
UniProt:
A0A347UL98
LinkDB
All DBs
Position
3556097..3556927
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AA seq
276 aa
AA seq
DB search
MPELPEVETVRRGLIPVMEGKQIIRAQVRRPDLRWPFPDGMEQRLTGKRVERLRRRSKYI
LADLDSGETLLIHLGMSGRMLISKGDHPDIQKHDHVVFHMQDDARVVFNDTRRFGAMDLV
ATEQAEGHKLLASLGPEPLGNSFDEAYLLERLKGRNTPIKTALLDQKIVSGLGNIYVCEV
LLRTGISPTRKAGQLSAPRVRSLVPAIRDVLFEAIDSGGSSLKDYRQADGELGYFQHSFR
AYGREGEPCLTKGCNGKIRRITQGGRSTFYCAQCQR
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattacccgaagtcgagacagtccgtcgcgggctgatccccgtgatggagggc
aaacagatcatccgcgcccaggtgcgccgccctgatctgcgctggccgtttcccgacggg
atggaacaacggctgactggtaagcgggtggagcggctgcgtaggcgctcgaaatacatt
ctggccgatctggattcgggggaaacccttttgatccatctaggcatgtcggggaggatg
ctgatttccaaaggtgaccaccccgacatccagaaacacgaccatgtggtgtttcacatg
caggacgatgcccgcgtggtattcaacgacacacgacggttcggggcgatggatctggtg
gcgactgagcaggccgaagggcacaagctgctggccagtctggggccggaaccgctgggt
aacagctttgacgaagcctatttgctggagcggctaaagggccggaacaccccgatcaaa
accgcgcttctggatcagaaaatcgtgtcggggctgggcaatatctatgtctgcgaagtg
ctgctgcgaaccggaatttccccgacgcgcaaggcggggcaactatcggcaccacgggtg
cgatccctggttcccgccattcgcgatgtgttgtttgaggccatcgattcgggcggatca
tcgctcaaggactatcgtcaggcggatggcgaactgggatattttcaacacagctttcgc
gcctacggacgcgagggggaaccctgtctaaccaagggctgtaacggtaaaatccggcga
atcacgcaggggggacgctcaactttctattgtgcgcaatgccaaagataa
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