Pseudomonas antarctica: A7J50_0516
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Entry
A7J50_0516 CDS
T04830
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
panr
Pseudomonas antarctica
Pathway
panr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7J50_0516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panr03019
]
A7J50_0516
03016 Transfer RNA biogenesis [BR:
panr03016
]
A7J50_0516
Enzymes [BR:
panr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A7J50_0516
Messenger RNA biogenesis [BR:
panr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A7J50_0516
Transfer RNA biogenesis [BR:
panr03016
]
Prokaryotic type
tRNA degradation factors
A7J50_0516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
ANF83963
UniProt:
A0A172YUL5
LinkDB
All DBs
Position
637453..640086
Genome browser
AA seq
877 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV
LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEDKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILEQPKTSEAKALRGEYGHVVP
HLKQLYALYKVLLGARHVRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA
SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVQVMRVDLDERKIDFGMPDKPAEPTGRKKRGGETTAPASKGKGAPAKAAV
AEPAPAKPARRSSAKDKAPEAYRPSDAAAKNAELRKSRELKQQLLSEAKSGGKAASGGKS
REAEKPSSKPSKHRKGPPKAGSAPAKSGGSRKPKAKS
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcatctcgccgatcgtggttcgcctgctagc
cgcgagcagctggttgaagagttcggtctgaccaccgaagaccagctcgaagccctgcgc
cgccgtttgcgtgccatggagcgcgacgctcaactgatctacacccgccgtggcacctac
gcgcctgtggataagctcgacctgatccttggccgcattgccggtcaccgtgatggcttc
ggctttttgatcccggacgacggcagcgacgacttgttcatgagcccggcgcaaatgcgc
ctggtgttcgatggcgaccgtgccctggcgcgcgtttccggcctggaccgtcgcggtcgt
cgtgaaggcgtgatcgtcgaagtggtgtcgcgtgcccacgagtctatcgtcggccgttac
ttcgaagagggcggtattggctttgttgtgccagataaccccaaggtccagcaggaagtg
ctgattaccccgggtcgcaatggcgccgccaaggtcggccagttcgtcgaggtgaaaatc
acccattggccgactgcgcgcttccagccgcaaggcgatatcgttgaagtggtcggcaac
tacatggcgccgggcatggaaatcgacgttgcgctgcgcacctacgatattcctcacgtc
tggcctgaggctgtgctcaaagaagccgccaagctcaagccggaagttgaagacaaagac
aaagaaaaacgcatcgacctgcgccatctgccgttcgtcaccattgacggcgaagatgcg
cgtgacttcgacgatgcggtctactgcgaagccaagcctggcaagctgcgcctgttctcc
ggcggctggaagttgttcgtcgcgattgccgacgtgtccagctacgtgaagattggttcg
gccctggacaacgaagctcaggtgcgcggcaactccgtgtacttccctgagcgcgtgatt
ccgatgctgcctgagcagttgtccaacggcttgtgctccctgaacccgaaagtcgaccgt
ttggccatggtgtgcgagatgaccatctcgaaaaccggcgaaatgacggactaccagttc
tacgaagcggtgattcattcccaggcgcgcctgacctacaacaaggtcagcaccatcctg
gaacagccgaagaccagcgaagccaaagcactgcgcggtgagtatggtcatgttgtgccg
cacctcaagcagctgtacgcgttgtacaaagtgctgttgggcgctcgtcacgtgcgtggc
gcgatcgattttgaaacgcaggaaacccgaattgtcttcggttccgagcgcaagatcgcg
gcaatcaccccgaccacgcgtaacgatgcgcacaagctgatcgaggaatgcatgctggcg
gccaacgtggccactgcggaattcctgaaaaagcacgagattcctgcgttgtaccgggtg
catgacggcccgccgccggagcgcctggagaagctgcgcgcgttcctcggtgagctcggc
ctgtccctgcacaaaggcaaggacggcccgacgccgaaggactaccaggcactgctcgcg
agcatcaaggaccgtccggattaccacgtgatccagaccgtgatgctgcgctccctgagc
caggcggtgtacagcgctgataatcagggccacttcggcctgaattacgaagcgtacacc
cacttcacgtcgccgattcgtcgttacccggacctgctcacgcaccgcgcgatccgcagc
gtgatccattccaagcagaacaccccgcacgtcaagcgcgccggtgccatgaccattccg
aaagcgcggatttatccgtacgacgaagcggccctggaacagctgggcgagcagtgctcc
atgagcgagcgccgtgccgacgaagccacccgcgatgtagtgaactggcttaagtgcgag
ttcatgaaagaccgcgtgggcgagtcgttccctggcgtcatcacggccgtaaccgggttt
ggtctgttcgttgagctgactgacatctatgtcgagggcctggtgcacgtcaccgccttg
ccgggtgactactaccactttgaccctgtgcatcaccgcctggcgggcgagcgcaccggt
cgcagcttccgcttgggcgataccgttgaggtgcaggtcatgcgcgtcgaccttgacgag
cgcaagatcgacttcggtatgcctgacaagccagccgagccgactggccgtaagaaacgt
ggcggcgagacgactgcgccggccagcaaaggcaaaggtgctcctgcgaaagcagcggtc
gccgagcctgcgccagccaagcctgctcgtcgttcgtctgccaaggacaaggcccccgaa
gcctaccgcccaagcgatgccgcggcaaaaaacgcagaactgcgcaagagccgcgagttg
aagcagcagttgctcagcgaagccaaaagcggtggtaaagcggcgtctgggggaaagtcc
cgcgaggcggaaaagccgtcgagcaagccgagtaaacaccgtaaaggcccgcctaaagcg
ggttcggcccccgcgaaaagcggcgggtcgcgcaaacctaaggccaagtcatga
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