Pseudomonas antarctica: A7J50_2741
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Entry
A7J50_2741 CDS
T04830
Name
(GenBank) Putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
panr
Pseudomonas antarctica
Pathway
panr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
panr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A7J50_2741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
panr03400
]
A7J50_2741
Enzymes [BR:
panr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A7J50_2741
DNA repair and recombination proteins [BR:
panr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A7J50_2741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANF86139
UniProt:
A0A172Z2B3
LinkDB
All DBs
Position
complement(3015909..3018383)
Genome browser
AA seq
824 aa
AA seq
DB search
MAKPLSEYNRKRDFEITAEPAGDAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLKS
WAVPKGPSLDPSQKRLAVHVEDHPLSYGTFEGSIAPGQYGAGDVIVWDRGVWQPHDEPHK
AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARPTADYDIVQDQPK
SVLSGAVVGTPKPPKKREKAPTALPEQLTPQLATLVDRAPPGDWRYEIKFDGYRMLTRIR
DGEVRLFTRNGNDWTDRLPRQVKALQALKLKDSWLDGEVVSLNADGLPDFQALQNAFDIG
RSLDIVYYLFDAPFLQGQDLREAPVEERRAALKSALSGSRSKLLRFSEAFTANQRDIFES
ACDLALEGVIGKRAGSPYVSSRSADWIKLKCRLRQEFVIVGYTRPQGSRSGFGALLLAVN
DDAGLVYAGRVGTGFDQAALKSIYAQLTPLQRKTSPLEQPLTRTQARGVHWVEPSLVGEV
NFTEWTREGVVRQASFVALRTDKPATQINREQPRKAKSLTKATPARSASSAVNITHPDRV
IDPQSGTQKQQLAAYYDSISEWILPFLRHRPVSLLRAPQGIEGEQFFQKHSERLAIAHIK
QLDQKLDPGHARLMEIDTASALIGAVQMGTVELHTWGATSDHIETPDLFVLDLDPDPALP
WKTMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLVVPLARRDGWETVKAFAKAIAQFMAL
QLPERFSATSGPKNRIGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELKGLRG
AQQWTIANLHLRLNNLKGDPWTGYAHRQKISKTMWDKLGAKPPQ
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcccctgagtgaatacaaccgcaagcgcgattttgagatcaccgcagagccc
gcaggcgacgcgcctgctggtaaacgcaaggcttcggccctgtcattcgtgattcaaaaa
catgacgcccgcaacctgcactacgactttcgcctggagctcgatggcgtacttaaaagt
tgggcggtgccgaaggggccgagcctcgaccccagccagaaacgcctggcggttcacgtt
gaagaccaccctctgagctacggcacctttgaaggcagtattgcgcccggccaatatggt
gccggggatgtgattgtgtgggatcgcggtgtctggcaaccccatgacgagccgcacaag
gcgtatgcggccggcaaactcaagttcaccctggtcggtgaaaaactttccggcgattgg
gcgctggtccgcactcggctcaagggcagcggcgataaggaacagtggttgctgatcaag
gaaaaggacccgcaggccaggccgaccgctgactacgacatcgtccaggaccagccgaaa
agtgtgctcagcggcgccgtggttggtactcccaagccgccaaagaaacgcgagaaagcg
cccactgccctgcccgaacaactcaccccgcaattggcgaccctggttgaccgcgcaccg
cccggcgactggcggtatgaaatcaaattcgacggttaccgcatgctgacacgcatacgc
gacggtgaggtgcgcctgtttacccgcaacggcaatgactggaccgaccgcttgccgcgt
caagtcaaagcgctgcaagccctcaagctcaaggacagctggctggacggcgaagtggtc
agcctcaatgccgacggcttgccagacttccaggcgctgcaaaatgcgttcgatatcggc
cgcagcctggacatcgtctattacctgttcgacgcgccttttctgcaagggcaagatctg
cgcgaagcccccgtggaggaacgccgtgccgcgctcaaatccgcgctgtccggcagccgc
agcaaattgctgcggttctccgaagcctttaccgccaaccagcgcgacatcttcgaaagc
gcctgcgacctggcactggaaggcgtaatcggcaagcgcgcaggcagcccttatgtttcc
agccgcagtgccgactggatcaaactcaagtgccgcttgcgccaggagttcgtgattgtc
ggctacacgcgcccccaaggctcacgcagtgggtttggtgcgctgctgctggcggtcaat
gacgacgccgggctggtctatgccggacgcgtaggtaccgggtttgatcaggcggcgctg
aagtcgatctacgcgcagctcacgccgctgcaacgcaaaacctcaccgctggaacagccc
ttgacccgcactcaggcacgcggtgtgcactgggttgaaccctcgctggtcggcgaagtg
aatttcaccgaatggacccgcgaaggcgtggtgcgccaggcgtcattcgttgcgttgcgc
accgataagccggcgacgcagatcaatcgtgagcagccacgtaaggccaagtccctcacg
aaggctacgccggcgagaagcgccagcagcgctgtgaacatcacccaccccgaccgcgtg
attgacccgcaaagtggtacacaaaaacagcaattggccgcctactacgacagcatcagt
gaatggatcctgcccttcctgcgccaccggcccgtctcgctgctgcgtgcaccgcaaggc
atcgagggcgagcagttcttccaaaagcactctgagcgactcgccattgcgcatatcaaa
cagctggaccagaagctcgacccgggccatgcacgcctgatggaaatcgacacggcgagc
gccctgatcggcgccgtgcagatgggcacggtcgagctgcatacctggggcgccacctcg
gaccacatcgaaacccccgacctgtttgtacttgacctggacccggacccggcactgcct
tggaaaaccatgctggaagcagcgcaactgacactgtcggtattggatgagcttgggctc
caggccttcgtcaagaccagcggcggtaaaggtctgcacctggttgtaccgctcgcgcgc
cgggatggctgggagaccgtgaaggcgtttgccaaagccatcgcgcagttcatggcgctg
caattgcccgaacgctttagtgctacctcgggcccaaagaaccggatcggcaagatcttt
atcgactacctgcgcaacgcgcgtggcgcgagcaccgtcgccgcctattcggtcagggca
cgacctggcttgccggtatcggtaccggtgagtcgagaggaattgaaagggttacgcgga
gcccaacagtggacgatcgccaacctgcacctgcggttgaacaacctcaagggcgatccg
tggaccggttatgcgcaccggcagaagatcagcaagacgatgtgggacaagctgggcgcg
aaaccaccgcagtga
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