Pantoea ananatis PA13: PAGR_g0503
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Entry
PAGR_g0503 CDS
T01970
Name
(GenBank) ribonuclease R Rnr
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
paq
Pantoea ananatis PA13
Pathway
paq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAGR_g0503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paq03019
]
PAGR_g0503
03016 Transfer RNA biogenesis [BR:
paq03016
]
PAGR_g0503
Enzymes [BR:
paq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PAGR_g0503
Messenger RNA biogenesis [BR:
paq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAGR_g0503
Transfer RNA biogenesis [BR:
paq03016
]
Prokaryotic type
tRNA degradation factors
PAGR_g0503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
LexA_DNA_bind
YqfQ
Motif
Other DBs
NCBI-ProteinID:
AER31042
LinkDB
All DBs
Position
543090..545525
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AA seq
811 aa
AA seq
DB search
MSKDPFLDREAEKYENPIPSREFILALLEKREKPASREELAQEMNLQEEEHLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGYGFLRAEGQKDDLYLSAEQMKFCMH
GDVILAQPLGADRKGRREARVVRVQEPRNNQIVGRYFTDAGVGFVVPDDSRLSFDILIGP
DETMNARMGSVVVVELLQRPTRRSKAIGKIAEILGDDMGTSLAVDMALRTHEIPHSWPPE
VEAQVGKLNEEVPESAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDNEAQQRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGKLTGFKHYEAVMNSHARLTYNKVWNILQGNPELREQYAPLVKDLQELHNMYQVLETA
REERGGISFETEEAKFIFNAERRIERVERTSRNDAHKLIEECMILANIASARFVEKHQEP
ALFRDHDRPSDDSIKSFRTVLNELGLSLPGGNKPQPIDYAALLDQVADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALASYAHFTSPIRRYPDLLLHRAIKYLLAKEQGEVKGLTTAT
GGYHYDMQQMLQLGQHCSMTERRADEATRDVADWLKCDFMQDQVGNVFNGVISSVTGFGF
FVRLSDLFIDGLVHVSTLDNDYYRFDPVGQRLIGESGGRTYRLGDTVEVRVEAVHMDERK
IDFALVSSKRQVRGEGKTERDKAKRNAKAPTKHRRQAGRKTNFEPDSAFRNSSSQPAAAK
TEKKSKKVSEKTRKIAAATKAKRAAKKAKPA
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttctggacagagaagctgaaaagtacgaaaaccctattccaagc
cgtgaatttattctggcgttattagaaaaacgagaaaaaccggccagccgtgaagagctg
gcacaagagatgaacctgcaggaagaagaacacctcgaagccttgcgccgtcgtttacgt
gcgatggagcgtgacggtcagttagtttttacccgccgccagtgttatgccttgccagaa
cgtctcgatctgctccgtggaaaagtcattggccaccgtgatggctatggctttctgcgc
gcagaaggacaaaaagacgatctctacctgtctgcggaacagatgaaattctgcatgcac
ggcgacgtgattctggcccagccactgggtgcggatcgcaaaggccgccgtgaagcccgt
gtggtgcgggtacaggaaccgcgtaacaatcaaatcgtcggccgctactttacggacgcg
ggcgtgggatttgtggtgcctgatgacagccgtctgagcttcgacatcctgattggccct
gacgaaaccatgaatgcccgaatgggctccgtggtggtggttgaactgttgcagcgcccg
acgcgtcgttcgaaggcgatcggcaaaatcgcagagattctgggcgatgacatgggcacc
agcctggcggtcgatatggcgctgcgcacgcatgaaattccgcacagctggccgccagag
gttgaggctcaggtgggcaaactgaatgaagaggtcccggagtcggcaaaaaaaggccgt
gttgaccttcgcgatctgccattggtcactattgatggtgaagatgcgcgcgacttcgat
gatgctgtttactgcgagaaaaaacgcggcggcggctggcggctgtgggtcgcgattgcg
gacgtcagttattatgttcgtcccggcacaccgctggacaacgaagcgcagcagcgcggt
acctcggtctatttcccttcgcaggtggtgccgatgctgccggaagtgctgtcgaacggc
ttgtgttcgctgaatccacaggtcgatcgcctgtgtatggtgtgcgaaatgaccgtgtcg
tcaaaaggtaagctcaccggctttaagcattatgaagccgtgatgaactcccatgcacgt
ctgacctataacaaagtctggaatattctgcagggcaatccggaactgcgtgagcaatat
gcgccgctggtgaaagacctgcaggaactgcacaacatgtatcaggtgctggaaacggcc
cgtgaagagcgcggcggcatctcatttgaaaccgaagaagcgaaatttatcttcaacgcg
gaacgtcgaattgaacgtgtcgagcgcacctcacgtaatgatgcccacaagctgattgaa
gagtgcatgattctggcaaacattgcctccgcgcgtttcgtcgagaagcatcaggaaccg
gcactgttccgcgatcacgatcgtcccagcgatgacagtatcaaaagcttccgcacggta
ttgaatgagttgggtctgagcttaccgggcggtaacaaaccgcagccgatcgattacgcc
gcgctactggatcaggttgccgatcgccccgacgcggaaatgctgcaaaccatgctgctg
cgttccatgaaacaggcggtgtacgatccggaaaaccggggccactttggcctggcgctg
gcctcttatgcgcacttcacttcgccaatccgccgctatccggatttgttactgcatcgc
gccatcaagtatctgctggcaaaagagcagggcgaagtaaaaggcctgaccacggctacc
ggcggctaccattacgatatgcaacagatgctgcagctgggccagcactgctccatgaca
gagcgccgtgccgatgaggccactcgcgatgtggcagactggctgaagtgtgactttatg
caggatcaggtaggcaacgtctttaacggcgtgatctccagcgtgaccggattcggcttc
tttgtgcgcctgagcgatctctttatcgacgggctggttcatgtctctacgctggacaac
gactactatcgtttcgatccggtagggcagcgactgattggcgaatctggcggtcgtacc
tatcgcctgggcgataccgttgaagtccgggtcgaagcggtccatatggacgagcgtaaa
atcgactttgcgctggtttccagcaagcgccaggtacgtggcgaaggcaaaacggaacgg
gataaggcgaagcggaacgctaaggcaccgacgaagcatcgccgccaggccggtcgcaaa
acgaatttcgagccggattcagccttccgcaacagcagcagtcagcctgctgcggcaaag
actgagaaaaaaagtaaaaaagtttccgagaaaacccgtaaaatcgccgccgccaccaag
gctaagcgtgccgcgaagaaggcgaagccggcctga
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