Pantoea ananatis PA13: PAGR_g4132
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Entry
PAGR_g4132 CDS
T01970
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
paq
Pantoea ananatis PA13
Pathway
paq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAGR_g4132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paq03019
]
PAGR_g4132
Enzymes [BR:
paq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAGR_g4132
Messenger RNA biogenesis [BR:
paq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAGR_g4132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AER34617
LinkDB
All DBs
Position
4516474..4517766
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AA seq
430 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVVEALDKKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKT
MAFLTSTFHHLLSHPAPEGRQVNQPRALILAPTRELAVQIHADAEPLAASTGLKLGLAYG
GDGYDKQLKVLENGVDILVGTTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIR
WLFRRMPAATQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLVEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGDIDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLA
CEEYALNLPGIEEYIGHSIPVSKYNSDALLTELPPPKRLTRNRSGNGQRRGGNNTGRRGA
PRHSNRKRSG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcaccctctggtg
gtggaagcccttgataaaaaagggtttcataactgcacgcctatccaggcgttagcactg
ccgtttacgctttcagggcgtgatgtcgcaggtcaggcgcaaaccggtaccggcaaaacg
atggcgtttttaacgtcaacgtttcatcatcttctctctcaccctgctccagagggccgc
caggttaaccaacctcgcgctttaattctggccccaacccgtgaacttgcggtgcaaatt
cacgccgatgctgaaccactggcggcatcaaccggccttaaattaggtctggcttacggt
ggcgatggctacgacaaacagttaaaagtactggaaaacggtgtcgacattctggtgggt
accaccggccgtttaatcgattacgccaagcagaatcacgtcaatctcggtgccattcag
gtcatggtactggacgaagccgatcgcatgttcgatctcggctttataaaagatatccgc
tggttgttccgtcgcatgcctgctgccacgcaacgcctgagcatgctgttctccgccacg
ctctcttaccgcgtgcgtgagctggcattcgagcacatgaacagcgccgaatacgttgaa
gttgaacctgagcaaaaaaccggtcatcgcattaaagaagagcttttctacccttcgaat
gaagagaaaatgcgcctgttacagacgctggtagaagaagagtggcctgacagagcaatc
atttttgcgaataccaagcatcgctgtgaagacatttggggccatctggctgcagacggt
caccgggtcggcctgctgacgggtgacgtggcacagaagaagcgtttacgtatcctggat
gactttaccaaaggcgatattgatattctggtcgcgaccgacgttgcggctcgtggcctg
catattcctgcggtgacgcacgtatttaactatgacctgccggacgatcgcgaagactat
gttcaccgcattggccgtacgggacgtgcaggcgcaagcggtcactccatcagcctggcc
tgtgaagagtacgcattaaacctgcccggtattgaagagtacattggtcacagcattccg
gtgagtaaatacaacagcgacgcgctgttaactgaattaccgccaccgaaacgtctgacg
cgcaatcgctcaggcaacggtcagcgtcgcggaggcaacaataccggccgtcgcggtgca
ccccgtcatagcaaccgtaaacgttcgggttaa
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