Paucibacter aquatile: K9V56_014670
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Entry
K9V56_014670 CDS
T09144
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paqa
Paucibacter aquatile
Pathway
paqa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paqa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K9V56_014670 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paqa03400
]
K9V56_014670 (mfd)
Enzymes [BR:
paqa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K9V56_014670 (mfd)
DNA repair and recombination proteins [BR:
paqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K9V56_014670 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
DUF4217
SNF2-rel_dom
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WIW00229
LinkDB
All DBs
Position
3469031..3472495
Genome browser
AA seq
1154 aa
AA seq
DB search
MQFPLIQPGKKFSLPRPTGSADALLLARYAQQQLGAGRLTAIITAEPGDTQRLEDELKFF
APELRVGVFPDWETLPYDTFSPHQDLISERLATLWQLLQSRGKPAAERELDVVLLPATTA
LTRLAPPSFLAATTFNFAQKQRLDEASLKSQLTLAGYNHVAQVVSPGEYAVRGGLIDLFP
MGSLVPYRVDLFGDEVDSIRTFDPDSQRSLYPVPAVRLLPGREFPMDEAARQTFRSRWRE
KMEGDPSRSRIYKDMGQGIATGGIEYYLPLFFEQTASIFEFLGEHCALALHGEIDEALGR
FWTDTRERHRFLQHDPERPILPPEEIYFKSEEFFSLTHAHPVLAVRGKEAVDYARPLPDV
SVERGAQEPLARLAAHLLSTPHRVLLLAESEGRRESLLELLRDNKIDPPSVSSLADFETS
PEKFAITAAPLAAGFFWNDPEGGHQIQIFTETELFATTPTTRRRRKQEQVSDVNALIKDL
SELKVGDPVVHNNHGIGRYQGLINIDIGDGASEFLHLEYADKATLYVPVAQLHLISRYTG
VSADEAPLHRLGSGQWEKAKRKAAEQVRDTAAELLNLYARRAAREGHAFRYSGHDYEAFA
ASFGFEETPDQRAAIHAVIQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAI
LAPTTLLAEQHYQNIADRFGRWPVKVAEMSRFRSSKEIKAALEGLADGTIDIVVGTHKLL
SSECKFARLGLLVIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLS
VIATAPQRRLAIKTFVRSETSGTIREAMLRELKRGGQVYFLHNEVETIENRRQKLEELVP
EARIIIAHGQMPERELERVMREFVGGKHNVLLCSTIIETGIDVPSANTIIISRADKFGLA
QLHQLRGRVGRSHHQAYAYLMVPDLEGLTKQAAQRLDAIQGMEELGSGFYLAMHDLEIRG
AGEMLGEHQSGNMMEIGFQLYNEMLAEAVRSLKAGKEPDLLSPLGATTEINLHAPALLPD
AYCGDVHQRLSLYKRLATAEKSEQIDKLLEEVTDRFGKLPAQGQTLFDTHRLRVLAKPYG
VLKIDAAPSVMNINFRPNPPIDAMRVIELVQKNKSIKLVGNDKLRIDKALSDPKDRAQAI
REVLRLLGQPLKQD
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
ctgcagttccccctgatccagcccggaaaaaagttcagcctgccccgacccacgggctca
gccgatgcgctgctgctggcgcgctacgcccagcagcagctgggcgccggccggctgacg
gccatcatcaccgccgagccgggcgacacccagcgcttggaggatgagctcaagttcttc
gcgcccgaactgcgcgtgggcgtcttccccgattgggaaaccctgccctacgacaccttc
tcgccccaccaggacctgatctccgagcgcttggccacgctctggcagctgctgcaaagc
cgcggcaagccggcggccgagagggagctggacgtggtgctgctgccggccaccacggcg
ctgacccgcctggccccgcccagcttcctggccgccaccaccttcaatttcgcgcagaag
cagcgcctggacgaggccagtctcaaatcccagctgaccctggccggctacaaccatgtg
gcgcaagtcgtgtcgccgggcgagtacgcggtgcgcggcggcctgatcgacctcttcccc
atgggctccctggtgccctaccgggtcgacctcttcggtgacgaggtcgattccatccgc
acctttgaccccgacagccagcgcagcctctacccggtgccggcggtacgcctgctgccg
gggcgcgagttccccatggacgaggcggcgcgccagaccttccgctcgcgctggcgcgaa
aagatggagggcgacccgagccgctcgcgcatctacaaggacatgggccagggcatcgcc
actggcggcatcgagtactacctgcccctgttcttcgagcagacggccagcatcttcgag
ttcctgggcgagcattgcgcgctggccctgcacggcgagatcgacgaggccctgggccgc
ttctggaccgacacccgcgagcgccaccgctttctgcagcacgaccccgagcggcccatc
ctgccgcccgaagagatctacttcaagagcgaggagttcttcagcctgacccacgcgcac
ccggtgctggccgtgcgtggcaaggaggcggtggactatgcccgccctctgcccgatgtg
tccgtcgagcgcggcgcgcaagagcccctggcccgcctggccgcgcatctgctgagcacg
ccgcaccgcgtgctgctgctggccgaaagcgaaggccggcgcgagagcctgctggagctg
ctgcgcgacaacaaaatcgacccgccctcggtcagcagcctggccgatttcgagaccagc
ccggagaagttcgccatcacggcggcgccgctcgcggccggctttttctggaacgacccc
gaaggcggccaccagattcagatcttcaccgagacggagctgttcgccaccacgccgacc
acgcggcgccggcgcaagcaggagcaggtctccgacgtcaacgccctgatcaaggacctg
tccgagctcaaggtcggtgacccggtggtgcacaacaaccacggcatcggccgctaccag
ggcctgatcaatatcgacatcggcgacggcgccagcgaattcctgcatctggaatacgcc
gacaaggccacgctctacgtgccggtggcccagctgcacctgatcagccgctacaccggc
gtctcagcggacgaagcgccgctgcaccgcctgggctcgggccagtgggaaaaggccaag
cgcaaggccgccgagcaggtgcgcgacaccgctgccgagctgctcaacctctacgcccgc
cgcgccgcccgcgagggccatgccttccgctactcgggccacgactacgaggccttcgcc
gccagcttcggcttcgaagaaacgcccgaccagcgtgccgccatccatgcggtgatccag
gacatgatcagccccaaacccatggaccgcctggtctgcggcgatgtgggttttggcaag
accgaggtggcgctgcgcgcggcattcgtcgcggtgatgggcggcaagcaggtcgccatc
ctcgcacccaccaccttgctggccgagcagcattaccagaacatcgccgaccgcttcggt
cgctggccggtcaaggtggcggagatgagccgcttccgctccagcaaggagatcaaggcc
gcgctcgaaggcctggccgacggcaccatcgacatcgtggtcggcacccacaagctgctg
tccagcgaatgcaagttcgcacgtctgggcctgctggtgatcgacgaggaacaccgcttc
ggtgtgcgccacaaggaggcgatgaaggccatgcgggccgaggtcgatgtgctgaccctg
accgccacgccgatcccgcggaccctgggcatggcactggaaggcctgcgcgatctgagc
gtcatcgccaccgcaccgcagcgccgcctggcgatcaagacctttgtgcgcagcgagacc
agcggcaccatccgcgaggccatgctgcgcgagctcaagcgcggcggccaggtctatttc
ctgcacaacgaggtcgagaccatcgagaaccggcgccagaagctcgaagagctggtgccc
gaggcccgcatcatcatcgcccacggccagatgcccgagcgcgagctggagcgggtgatg
cgcgagttcgtgggcggcaaacacaatgtgctgctgtgttcgaccatcatcgagaccggc
atcgacgtgcccagcgccaacaccatcatcatcagccgcgccgacaagttcggcctagcc
cagctgcaccagctgcgcggccgcgtcggccgctcgcaccaccaggcctatgcctatctg
atggtgcccgatctggaaggcctgaccaagcaggccgcccagcgcctggacgccatccag
ggcatggaagagctgggctcgggcttctacctggccatgcacgacctggagatccgcggc
gccggcgagatgctgggcgagcaccagagcggcaatatgatggaaatcgggttccagctc
tacaacgagatgctggccgaggcggtgcgctcgctcaaggccggcaaggagcccgatctg
ctctcgcccttgggcgccaccaccgagatcaatctgcatgccccggccctgctgcccgac
gcctactgcggcgatgtgcaccagcgcctctcgctctacaagcgcctggccacggccgag
aagagcgagcagatcgacaagctgctggaagaggtgaccgaccgcttcggcaagctgccg
gcgcaaggccagaccctgttcgacacccaccgcctgcgcgtgctggccaagccttacggc
gtgctcaagatcgacgcggccccctcggtgatgaacatcaacttccgccccaacccgccg
atcgacgccatgcgcgtgatcgagctggtgcagaagaacaagagcatcaagctggtcggc
aacgacaagctgcgcatcgacaaggcgctctccgaccccaaggaccgcgcgcaagccatc
cgcgaagtgctgaggctgctcggccaacccctcaagcaggactga
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