Paraburkholderia sp. SOS3: BTO02_12435 Help Entry BTO02_12435       CDS       T04966                                  Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism para  Paraburkholderia sp. SOS3 Pathway para03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:para00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     BTO02_12435  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:para03400]     BTO02_12435 Enzymes [BR:para01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      BTO02_12435 DNA repair and recombination proteins [BR:para03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      BTO02_12435 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S Motif Other DBs NCBI-ProteinID:  APR36085 UniProt:  A0A1L6HXS1 LinkDB All DBs Position 1:complement(2781330..2784230) Genome browser AA seq 966 aa AA seqDB search MADKLETYHRKRRFDETPEPSGADAPRKAAGRGAARKATHALAFVIQEHDARRLHYDFRL ELDGTLKSWAIPKGPSLDPSVKRLAVHVEDHPLDYGSFEGTIPEGHYGAGDVIVWDRGTW EPVGGEREALAAYAAGKLKFQLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDREAHSE SEFDVLGAYPGSVLSDAPGAQGGHGASKGERAARPQTKPQSTGRAPARTARTSTGTSAAR RSEHPDIVATRNSESLRELAQTPAIEGAKKAALPAAMKPELATLVETPPAGDTWTYEIKF DGYRVLARIDQRNEKDPVRIFTRAGNDWTERFGKQAQALAKIGVETAWLDGEAVVLDEHG VPSFQALQNAFDTHRERDITLYLFDLPYLNGYDLRNVPLEQRRALLRALLESLDDDALRY SADFGTDAEALIRSACEMSLEGIIGKRRDSRYTSGRSSAWIKLKCRRRQEFVIGGYTEPG GSRSDFGALLLGVYDEGGKLRYAGRVGTGFDAKRLRAVKKELDARETTKMPFASVPSERS RTPVHWVKPELVAECNFAELTDEGIVRQASFVSLRSDKPARQIVIEAPRQGADVQQTSED ESAASRAAPRTKARAAKARTATHDGDGTAATKRAGKASSSRKTAQAEGGDTRAATAASRG TSKARGAATQTVAGVRISHPDRVIDKHTDTRKIDLVRYYESVADWMLPHLRDRPVSLVRA PEDIGGELFFQKHAEKLSIPNITQHPGLDPGHPSLITIDSAKALVGAAQMGTIELHTWNA VASNIEKPDRVVFDLDPDPALGWERMIEAAQLTHTLLAELGLVSFCKTSGGKGLHVVVPL TKHEGWDDVKAFSQAVAQHMASTLPKNFAAKMGAQNRKGKIFVDYLRNNRGSSTVAAYSA RARPGLGVSVPLSWDEVPDTTAGDQWNIANLHERLQSLREDPWADYAKTRQRITAAMRKR LAGERG NT seq 2901 nt NT seq  +upstreamnt  +downstreamnt atggccgacaaactggaaacctatcaccgcaaacgacgcttcgatgaaacgcccgagccg tccggggcggatgcgccgcgcaaggccgccggccgaggcgcagcgcgcaaagcgacgcat gcgctcgccttcgtcattcaggagcacgatgcacggcgtctgcactacgacttccggctc gagctcgacggcaccctgaaatcgtgggcgataccgaaagggccgagcctcgacccgtcg gtgaagcggctcgccgtgcacgtcgaagaccatccgctcgactatgggtcgttcgagggc acgattccggaaggccactatggcgcaggcgacgttatcgtttgggaccgtggcacgtgg gaaccggtcggcggcgagcgcgaggcgctcgccgcatacgcggccggcaagctcaagttc cagttgcacggcgagaagctgcacggcggctggacgctcgtgcgcagccatatgcgcggc agcggcgacaaggagcagtggctgctgatcaaggagcgcgaccgcgaagcccatagcgag agcgaattcgatgtgctcggcgcgtatcctggcagtgtgttgtccgatgcgccgggcgcg cagggcgggcacggtgcgagcaagggcgagcgcgccgccaggccgcagaccaagccgcaa tcgactggccgcgcgcccgctcgcacggctcgtaccagcactggcaccagcgcggccagg cgcagcgagcaccccgacatcgtcgcgacgcgcaacagcgagtcgctgcgcgagctcgcg caaacgcctgcgatcgaaggagcgaaaaaggccgcgctgcctgccgcgatgaagccggag ctcgctacgctcgtcgaaaccccgcccgccggcgacacatggacctacgagatcaagttc gacggctaccgcgtgctcgcgcgcatcgatcagcgcaacgagaaagatccggtgcgcatt ttcacgcgcgcgggcaacgactggaccgaaaggttcggcaaacaggcgcaagcgctcgcg aagatcggagtcgagaccgcatggctggacggcgaagccgtggtgctcgacgagcatggc gtaccgagctttcaggcgctgcaaaacgcgttcgatacgcatcgcgaacgcgacatcacg ctgtatctgttcgacctgccgtatctgaacggctacgacctgcgcaacgtaccgctcgaa cagcgccgcgcattgctacgcgcgctgctcgaatcgctcgacgacgacgcgttgcgctat tcggccgacttcggcactgacgctgaggccttgatcagaagcgcgtgcgagatgtcgctc gaaggcatcatcggcaagcggcgcgacagccgttatacgtcgggccgttcgtcggcatgg atcaagctcaaatgccggcggcgccaggaattcgtgatcggcggttatacggaaccgggc ggcagccggtcggacttcggcgcgctgctgcttggcgtctacgacgaagggggcaagctg cgctatgcaggccgcgtcggcacgggcttcgatgcgaagcggctgcgtgccgtaaaaaaa gagctcgacgcgcgcgaaacgacgaagatgcctttcgcgagcgtacccagcgaacgcagt cgcacacccgtgcactgggtcaagcccgagctcgtcgccgaatgcaatttcgccgaattg accgatgaaggcatcgtccgccaggcgtcgtttgtcagcctgcgcagcgataaacccgcg cggcagatcgtcatcgaagcgccgcgccaaggagctgacgtgcaacagacgagtgaagac gaaagcgcagcctcgcgggccgcgccgcgtacgaaggcacgcgcggcgaaagcgcggacc gcgacgcatgacggcgacggcacggcggcaaccaaacgcgcaggtaaggcgtcttcgtcg cgcaagacggcgcaagccgaaggcggcgacacgcgcgcggcaacggctgcgtcgcgcggc acatcgaaagcgcggggcgccgcgacgcagacggtcgcgggcgtgcggatctcgcatccg gaccgcgtgatcgacaagcacacggacacacgcaagatcgatctcgtgcgctattacgag tcagtggccgactggatgctgccgcatctgcgcgatcgcccggtgtcgctcgtacgcgcg cccgaggatatcggcggcgagctgtttttccagaagcatgccgaaaagctgtcgatcccg aacatcacgcagcatccggggctcgatcccggccatccgtcgctgatcacgatcgacagc gcgaaagcgctcgtcggcgcggcgcagatgggcacgatcgagttgcacacgtggaatgcg gtggcctcgaacatcgagaaacccgaccgcgtcgtgttcgatctcgaccccgatcctgcg ctcggctgggagcggatgatcgaagcggcgcaactgacgcatacgctgctcgccgaactc ggactcgtatcgttctgcaagacgagcggcggcaagggcctgcatgtcgtggtgccgctg acgaaacacgagggctgggacgacgtaaaggcgttttctcaggccgtcgcgcagcacatg gcgagcacgctgccgaagaacttcgccgcgaagatgggcgcgcaaaaccgcaagggcaag atattcgtcgactacctgcgcaacaaccgcggctcgagcacggtcgcagcctattcggcg cgcgcgcggccgggtctcggcgtctcggtgccgctcagttgggacgaagtgccggacacc acggccggcgaccagtggaacatcgcgaatctgcacgagcgcctgcagtcgctgcgcgag gatccgtgggccgactatgcgaagacgcggcagcgcatcacggcggcgatgagaaaacgc ctcgcgggcgaacgcgggtag

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