Priestia aryabhattai: I5S86_14740
Help
Entry
I5S86_14740 CDS
T07135
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
parh
Priestia aryabhattai
Pathway
parh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
parh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I5S86_14740 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parh03400
]
I5S86_14740 (ligD)
Enzymes [BR:
parh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I5S86_14740 (ligD)
DNA repair and recombination proteins [BR:
parh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I5S86_14740 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QPN42836
LinkDB
All DBs
Position
3176110..3178605
Genome browser
AA seq
831 aa
AA seq
DB search
MAKPLQEYERKRDFNATPEPSGKRSRAKRSHALQFCIQKHDASHLHYDFRLELNGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGNIPQGHYGAGDVIVWDRGIWEPEGDANQA
YAKGKLRFRLQGEKLSGVWNLFRTRLAGKKEQWMLVKSHDAQARSEADYSIVEAQPDSVI
SDRTLVPRSSASAKPVQPPKRKRAGAGKKATLPGQLQPQLATLVDSPPAGDWRYEVKFDG
YRVLARIEGDDVRLFTRNGHDWSHKMPRQVAALRALGLDSAWLDGEMVVNGENGVADFQA
LQNAFDTAHDERIVYYLFDLLFLGGQDLRERPLEDRRKALGELLEHDQSEVLEFSADFEQ
PVESLLDSACRLQLEGLIGKRAGSPYTGRRSADWIKLKCKQRQEFVIVGFTDPKGSRSGF
GALLLALHDPDSGELRYAGKVGTGFSATTLDSIHARLKPLEIGKPALPRPPTGAEARGVH
WLKPKLMAEVAYAQMTRDGVVRHSVFHGLRDDKPASAIDLERAMPAKTVPKAKRAKATEG
LGDLRLTHPERIIDASIGATKRQIAEYYAGVSQWILPQLKDRPVALVRAPEGLDGELFFQ
KNAGQLHIANVLSYDKAEAGQAAMVINRPDTLLGAVQMNMLELHTWNATDKDFDKPDRFV
LDLDPDPALPWKAMLEATQLALTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDF
SHAVVNYLAKLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRAREGLPVSVPV
WREELGQLKGANQWHIGNLHERLAEVDDPWADMGKTRQSITARMRKQMGMT
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggaatatgagcgcaagcgcgacttcaatgccacacccgagccc
agtggcaagcgcagccgtgccaaacgtagccatgccctgcagttctgcattcagaagcac
gacgccagccacctgcattacgacttccgtctggaactgaacggtacgctgaaaagctgg
gccatccccaaagggccctccctggaccccaaggtgcgacgcctggcggtgcacgtagag
gatcacccgctcgactacgccgatttcgaaggcaatatcccgcagggtcactatggcgcc
ggcgatgtgatcgtctgggaccgtggcatctgggagccagagggtgacgcaaaccaggcc
tatgccaagggcaagctgcgctttcgcttgcaaggggagaagctgagcggcgtgtggaac
ctgttccgcacccgcctggcaggcaagaaagagcagtggatgctggtcaagtcccacgat
gctcaggcacgcagcgaggccgactacagcatcgttgaagcgcagcctgacagcgtgatc
agcgatcgcacgctggtgccgcgaagcagtgccagcgccaaacctgtgcaaccgcccaag
cgcaagcgggccggcgcgggcaagaaagcgaccttgcccgggcaactgcaaccgcagctt
gcgaccctggtcgattcaccccccgctggcgactggcgctatgaagtcaagttcgacggt
tatcgcgtgctcgctcgtattgaaggcgacgacgtgcggctgttcacccgcaacggccat
gactggagccacaaaatgccaaggcaagtggctgcgcttcgcgctttaggcctggacagc
gcctggcttgatggcgagatggtcgtcaacggcgagaacggggtggccgacttccaggcg
ttacagaatgccttcgacaccgcccacgacgagcggatcgtctattacctgtttgacctt
cttttcctgggtggccaggacctgcgcgagcggcccctggaagaccggcgcaaagcattg
ggtgaactgcttgagcatgaccagtccgaggttctggagttttctgccgacttcgagcaa
ccggtggagtcgctgctcgacagcgcctgccgcctgcagcttgaagggttgatcggcaaa
cgcgccggtagtccctatacgggccggcgcagcgcggactggatcaagctcaagtgcaaa
cagcgccaggagttcgtcattgtcgggttcaccgaccccaaggggagccgcagcggcttc
ggtgccctgttgctcgccctgcatgacccggacagcggtgagctccgttatgccggcaag
gtcgggaccggcttcagcgccaccacactcgacagtatccatgcacgcctcaaacccctg
gaaatcggcaaacccgccctgccccggccacccaccggggctgaagcccgaggagttcat
tggctcaagccgaaactgatggcagaagttgcgtatgcgcaaatgactcgggacggcgtg
gttcgccattcggtcttccatgggctgcgcgacgataaacctgccagcgccatcgacctg
gagcgtgccatgcctgccaagaccgtgcccaaagccaagcgtgccaaagcgacagaaggc
ctgggcgacctgcgcctgacgcatccggagcgcatcatcgacgccagcattggcgccacc
aagcgccagattgccgaatactacgcaggcgtcagtcagtggatcctgccgcaactcaag
gaccgcccggtggcgctggtacgggcgccggagggcctcgatggcgagctgttcttccag
aagaacgccggccagttgcatatcgccaatgtgctcagttacgacaaggccgaagccggt
caggcggcgatggtcatcaatcgccctgatacgttgctcggtgccgtgcagatgaacatg
ctcgagctgcacacctggaatgccaccgacaaggacttcgacaagcccgaccgttttgtg
ctcgaccttgacccggacccggcactgccctggaaggccatgctcgaagccactcagctc
gccctcacgctgctcgacgaactgggcctcaaagtgttcctcaagaccagcggcggcaaa
ggcatgcacctggtcgtgccattgacccgccgtgcggggtgggacgaggtgaaagacttc
agccatgccgtagtcaattacctggccaagctgttccccgaccggctcagcgcggtgtcc
gggccaaagaaccgggttgggcggatcttcatcgattacctgcgcaacggtaaaggtgcg
accactgcctgcgcttactccctgcgtgcccgggaaggcctgccggtgtcggtgccggtc
tggcgcgaagaactcggccagctcaagggcgccaaccagtggcacatcggcaacctgcac
gaacgcctggccgaggtcgatgacccgtgggcggacatgggcaaaacccgacagtcgatc
acagcgcgcatgcgcaaacagatggggatgacatga
DBGET
integrated database retrieval system