KEGG   Priestia aryabhattai: I5S86_14740
Entry
I5S86_14740       CDS       T07135                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
parh  Priestia aryabhattai
Pathway
parh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:parh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    I5S86_14740 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:parh03400]
    I5S86_14740 (ligD)
Enzymes [BR:parh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     I5S86_14740 (ligD)
DNA repair and recombination proteins [BR:parh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     I5S86_14740 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QPN42836
LinkDB
Position
3176110..3178605
AA seq 831 aa
MAKPLQEYERKRDFNATPEPSGKRSRAKRSHALQFCIQKHDASHLHYDFRLELNGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGNIPQGHYGAGDVIVWDRGIWEPEGDANQA
YAKGKLRFRLQGEKLSGVWNLFRTRLAGKKEQWMLVKSHDAQARSEADYSIVEAQPDSVI
SDRTLVPRSSASAKPVQPPKRKRAGAGKKATLPGQLQPQLATLVDSPPAGDWRYEVKFDG
YRVLARIEGDDVRLFTRNGHDWSHKMPRQVAALRALGLDSAWLDGEMVVNGENGVADFQA
LQNAFDTAHDERIVYYLFDLLFLGGQDLRERPLEDRRKALGELLEHDQSEVLEFSADFEQ
PVESLLDSACRLQLEGLIGKRAGSPYTGRRSADWIKLKCKQRQEFVIVGFTDPKGSRSGF
GALLLALHDPDSGELRYAGKVGTGFSATTLDSIHARLKPLEIGKPALPRPPTGAEARGVH
WLKPKLMAEVAYAQMTRDGVVRHSVFHGLRDDKPASAIDLERAMPAKTVPKAKRAKATEG
LGDLRLTHPERIIDASIGATKRQIAEYYAGVSQWILPQLKDRPVALVRAPEGLDGELFFQ
KNAGQLHIANVLSYDKAEAGQAAMVINRPDTLLGAVQMNMLELHTWNATDKDFDKPDRFV
LDLDPDPALPWKAMLEATQLALTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDF
SHAVVNYLAKLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRAREGLPVSVPV
WREELGQLKGANQWHIGNLHERLAEVDDPWADMGKTRQSITARMRKQMGMT
NT seq 2496 nt   +upstreamnt  +downstreamnt
atggccaagcccctgcaggaatatgagcgcaagcgcgacttcaatgccacacccgagccc
agtggcaagcgcagccgtgccaaacgtagccatgccctgcagttctgcattcagaagcac
gacgccagccacctgcattacgacttccgtctggaactgaacggtacgctgaaaagctgg
gccatccccaaagggccctccctggaccccaaggtgcgacgcctggcggtgcacgtagag
gatcacccgctcgactacgccgatttcgaaggcaatatcccgcagggtcactatggcgcc
ggcgatgtgatcgtctgggaccgtggcatctgggagccagagggtgacgcaaaccaggcc
tatgccaagggcaagctgcgctttcgcttgcaaggggagaagctgagcggcgtgtggaac
ctgttccgcacccgcctggcaggcaagaaagagcagtggatgctggtcaagtcccacgat
gctcaggcacgcagcgaggccgactacagcatcgttgaagcgcagcctgacagcgtgatc
agcgatcgcacgctggtgccgcgaagcagtgccagcgccaaacctgtgcaaccgcccaag
cgcaagcgggccggcgcgggcaagaaagcgaccttgcccgggcaactgcaaccgcagctt
gcgaccctggtcgattcaccccccgctggcgactggcgctatgaagtcaagttcgacggt
tatcgcgtgctcgctcgtattgaaggcgacgacgtgcggctgttcacccgcaacggccat
gactggagccacaaaatgccaaggcaagtggctgcgcttcgcgctttaggcctggacagc
gcctggcttgatggcgagatggtcgtcaacggcgagaacggggtggccgacttccaggcg
ttacagaatgccttcgacaccgcccacgacgagcggatcgtctattacctgtttgacctt
cttttcctgggtggccaggacctgcgcgagcggcccctggaagaccggcgcaaagcattg
ggtgaactgcttgagcatgaccagtccgaggttctggagttttctgccgacttcgagcaa
ccggtggagtcgctgctcgacagcgcctgccgcctgcagcttgaagggttgatcggcaaa
cgcgccggtagtccctatacgggccggcgcagcgcggactggatcaagctcaagtgcaaa
cagcgccaggagttcgtcattgtcgggttcaccgaccccaaggggagccgcagcggcttc
ggtgccctgttgctcgccctgcatgacccggacagcggtgagctccgttatgccggcaag
gtcgggaccggcttcagcgccaccacactcgacagtatccatgcacgcctcaaacccctg
gaaatcggcaaacccgccctgccccggccacccaccggggctgaagcccgaggagttcat
tggctcaagccgaaactgatggcagaagttgcgtatgcgcaaatgactcgggacggcgtg
gttcgccattcggtcttccatgggctgcgcgacgataaacctgccagcgccatcgacctg
gagcgtgccatgcctgccaagaccgtgcccaaagccaagcgtgccaaagcgacagaaggc
ctgggcgacctgcgcctgacgcatccggagcgcatcatcgacgccagcattggcgccacc
aagcgccagattgccgaatactacgcaggcgtcagtcagtggatcctgccgcaactcaag
gaccgcccggtggcgctggtacgggcgccggagggcctcgatggcgagctgttcttccag
aagaacgccggccagttgcatatcgccaatgtgctcagttacgacaaggccgaagccggt
caggcggcgatggtcatcaatcgccctgatacgttgctcggtgccgtgcagatgaacatg
ctcgagctgcacacctggaatgccaccgacaaggacttcgacaagcccgaccgttttgtg
ctcgaccttgacccggacccggcactgccctggaaggccatgctcgaagccactcagctc
gccctcacgctgctcgacgaactgggcctcaaagtgttcctcaagaccagcggcggcaaa
ggcatgcacctggtcgtgccattgacccgccgtgcggggtgggacgaggtgaaagacttc
agccatgccgtagtcaattacctggccaagctgttccccgaccggctcagcgcggtgtcc
gggccaaagaaccgggttgggcggatcttcatcgattacctgcgcaacggtaaaggtgcg
accactgcctgcgcttactccctgcgtgcccgggaaggcctgccggtgtcggtgccggtc
tggcgcgaagaactcggccagctcaagggcgccaaccagtggcacatcggcaacctgcac
gaacgcctggccgaggtcgatgacccgtgggcggacatgggcaaaacccgacagtcgatc
acagcgcgcatgcgcaaacagatggggatgacatga

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