Paracoccus jeotgali: CYR75_01430
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Entry
CYR75_01430 CDS
T05276
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paru
Paracoccus jeotgali
Pathway
paru03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CYR75_01430 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paru03400
]
CYR75_01430 (ligD)
Enzymes [BR:
paru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CYR75_01430 (ligD)
DNA repair and recombination proteins [BR:
paru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CYR75_01430 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AUM73128
UniProt:
A0A2K9MBW7
LinkDB
All DBs
Position
complement(278915..281401)
Genome browser
AA seq
828 aa
AA seq
DB search
MAKLDPYRRKRDFTITSEPEGKVAQTPGRSFVIQKHAARRLHYDFRLEMDGVLKSWAVTK
GPSLVPGAKRLAVHVEDHPLDYGGFEGNIPKGQYGGGAVILWDRGQWQPLGDADKGYAKG
HLEFELQGEKLTGRWHLVRMQKKPNEKRENWLLIKADDEAARGEDAPDILEERPESVASG
RSVEEVAAEAEKGAAPKRKPKAKAAKAKPAPDMDGAKKAKMPDFVQPALATLRAKAPEGE
GWIHEIKFDGYRLQAHIAEGQVKLLTRSGLDWTDRFGDGLIAALKALPVTTALIDGEVVV
EGGNSASSFSALQADLSEGRTDRFVFYAFDLMYLDGFDLRQAALQTRKSRLAAILPDQGP
VRFSSDFTESGDLVLRHACRLSLEGIVSKRLDAPYRSGRGKSWIKSKCSDRQEFVVGGYV
PSSATDKAIGSLVLGVYRDGALHHVGRVGTGFKAQVARDLFRQLQALETPDSPFADKLDA
TQRRGVQFVQPKLVAEVEFRAWTADGHLRHASFRGLREDKPATEVVQESQRKTPEAPRRR
VTLTHPDRIYWPEAGVTKEGLADYYTDVWPYMAPLVVGRPLALVRAPSGITGQRFFQKHA
RSGLNKHVRQVTDPKDKGGEKLISIDDLDGLIGLVQSGALEIHPWGAMNANLDKPDSLTM
DLDPGEGVGWQAVIDAAQEVRARLQAAGLNCFVKTSGGKGLHVVAPLKPKASWTALKAFT
KAIAAQMAADEPERFVATITKSKRKGRILIDYLRNQRGATTVAAYSSRAREGAPVSMPLA
WEELSPQIGPDHFTVLNATARLNGLVADPWQDFLAAAVPLPAGKGKAD
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagctggacccctatcgccgcaagcgcgacttcaccatcacctcggaacccgag
gggaaggtcgcgcagacgcctgggcggtccttcgtgatccagaaacacgccgcccggcgg
ctgcactacgatttccggctggaaatggacggggtgctgaaaagctgggccgtgaccaag
ggtccaagcctcgtgcccggcgcaaagcggctcgcggtccatgtcgaggatcatccgctg
gattatggcggttttgagggcaacatcccaaaggggcaatatggcggcggcgcggtcatc
ctgtgggaccggggtcagtggcagccgctgggcgacgcggacaagggctatgccaagggg
catctggaattcgaattgcagggcgagaagctgaccgggcgttggcacctggtgcggatg
cagaagaagcccaatgagaagcgcgagaactggctgctgatcaaagccgatgacgaggcc
gcccgcggcgaggatgcgccggacattctggaagagcggcccgagtcggtggcaagcggc
cgcagcgtcgaagaggtcgcggccgaggccgagaaaggcgcggcgccgaagcgcaagcca
aaggccaaagccgccaaggccaagcccgcgcccgacatggacggcgcgaagaaggcgaag
atgccggatttcgtccagcccgcgctcgccacccttcgcgccaaggcgcccgagggcgag
ggctggatacacgagatcaagttcgacggctatcgcctgcaggcccatatcgccgagggt
caggtcaagctgctgacccgcagcgggctcgactggaccgaccgcttcggcgacgggttg
atcgcggcgctgaaggccctgcccgtcaccaccgcgctgatcgatggcgaggtggtggtc
gaggggggcaacagcgcctcgagcttttccgcgctgcaggcggatctgagcgaggggcgg
accgaccgctttgtcttctatgctttcgacctgatgtatctggacggcttcgacctgcgg
caagccgcgctgcagacgcgcaaatcgcggctggcggcgatcctgcccgatcaggggccg
gtgcggttcagcagcgatttcaccgaaagcggcgacctggtgctgcgccatgcctgccgg
ctgagcctcgaagggatcgtgtccaagcggctggacgcgccctatcgctcgggtcgcggg
aaaagctggatcaagtcgaaatgctcggaccggcaggagttcgtggtggggggctatgtg
ccctcgtcggccacggacaaggccatcggctcgctggtgctgggggtttaccgcgacggg
gcgctgcaccatgtcggccgggtcgggaccgggttcaaggcgcaggtcgcgcgcgatctg
ttccggcagttgcaggcgctggaaacgcccgacagcccctttgccgacaagttggacgcg
acgcagcggcgcggcgtccagttcgtccagccgaagctggtggccgaggtcgagttccgc
gcctggaccgccgacgggcatctgcgccacgcctcgtttcgggggctgcgcgaggacaag
ccggcgaccgaggtggtgcaggaatcgcagcgcaagacccctgaggcgccgcgccgacgg
gtgacgctgacccatcccgaccgcatctattggcccgaggccggggtcacgaaagagggg
ttggcggattattataccgacgtttggccctatatggcgccgttggtggtgggccgcccg
ctggccttggtgcgcgcgcccagtggcatcaccgggcagcggtttttccagaagcacgcg
cgcagcgggctgaacaagcatgtgcggcaggtcacggatcccaaggacaagggcggcgaa
aagctgatctcgatcgacgatctggacgggctgatcggtctggtccagtcgggcgcgctg
gaaatccacccctggggcgcgatgaacgccaatctggacaagcccgacagcctgacgatg
gacctcgatcccggcgagggggtgggctggcaggcagtgatcgacgccgcgcaagaggtg
cgggcgcggctgcaggcggcggggctgaactgtttcgtcaagacctcgggcgggaaaggg
ctgcatgtggtggcaccgctgaagcccaaggcgtcgtggacggcgctgaaggcgttcacc
aaggccatcgccgcgcagatggcggccgacgagccggagcgctttgtcgcgacgatcacg
aaatccaagcgcaagggccgcatcctgatcgactatctgcgcaaccagcggggcgcgacc
accgtcgccgcctattccagccgcgcccgcgaaggcgcgccggtctcgatgccgctggcg
tgggaagagttgagcccccagatcgggccggatcacttcaccgtgctgaacgccaccgcc
cgcctgaacgggctggtggccgatccgtggcaggattttctggctgctgccgtgccgctg
cctgcgggcaaggggaaagctgactga
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