Prunus avium (sweet cherry): 110764590
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Entry
110764590 CDS
T05161
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like isoform X1
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110764590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110764590
Spliceosome [BR:
pavi03041
]
Complex B
Other components
Prp19-related factors
110764590
Complex C
110764590
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
RRM_occluded
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
110764590
NCBI-ProteinID:
XP_021823281
UniProt:
A0A6P5T7X8
LinkDB
All DBs
Position
Unknown
AA seq
488 aa
AA seq
DB search
MAHRLLRNVEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAIGSNDAIPKSDVNREFFAE
EHDRKARAGIDYESSYGKARPSDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDESIRTLYVGGLDERIS
EQDLRDQFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKQDSEGTAEARQQAVAHSGLLPRAVISQQQNQLQDQPAPVHYYNMPPPPSQERSFY
PSMDPQRMGAIVPSQEGAPSGPTGSSENNSSAERQQRSQHYAFQNMPQPHGQYRQQFYPP
PYGYMPPPPVPYQQYPPQYHAGVPPPPSLPMNQQYQHSATSGSAPSSSGPSGSTPSGSGS
AQTGSSQQ
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggctgctcaggaatgtggaggcggatggttgggaacgttcagactttccc
atcatctgcgagtcatgcttgggcgacaatccctacgtccggatgacacgagctgattac
gacaaggagtgcaagatttgcactaggccattcaccgttttcaggtggagacctggtcgt
gatgctcgatttaagaagtcagagatttgtcagacgtgcagtaagttgaaaaatgtttgt
caagtttgcctcttggatctggaatacggcttgccagttcaggttcgagatactgctcta
gccatcggttccaacgatgccattccaaagagtgatgtaaatagggagtttttcgctgag
gagcatgaccgaaaggctagagctggtatagactacgaatcttcatacggaaaggcacga
cccagtgacactattctgaagcttcaaagaacaacaccctattacaaaaggaacagagca
catgtctgcagtttctacattcggggtgagtgcacaagaggtgctgagtgtccttacagg
cacgagatgcccataactggggagttgtcacagcaaaacatcaaagatcgttactatgga
gtcaatgatccagtggcgatgaagctgcttaacaaggctggagagatgccctccctggaa
cctcctgaggatgaaagcataagaactctatacgtgggtgggcttgatgagagaatttct
gagcaggatttgagggatcaattttatgctcatggtgaaatagaatctgttaggatggta
ctccaacgagcatgtgcttttgtaacctacacaacaagagaaggtgcagaaaaggctgca
gaagaactctctaataaactggtaataaagggtttgagattgaagttaatgtggggtagg
ccccaagcaccaaaacaggactcagagggcacagctgaagctaggcagcaggcagtggct
catagtgggttgttgcctcgagcagtcatatctcaacagcagaaccaattacaagaccaa
cctgcaccagtgcactattacaacatgccacctccaccctcacaggagagatcattttat
ccatcaatggatcctcaaagaatgggggctatagttccatcccaggaaggggctcctagt
ggacctacagggtcaagcgagaacaattccagtgcagaaaggcagcaacgtagtcagcat
tatgcttttcaaaacatgcctcaaccacatggccaatatcgtcagcagttttatcctcct
ccctacgggtatatgcctcctccaccagtaccgtaccagcaataccctccacaatatcat
gctggagtgccgccgccaccatccttgccaatgaaccaacagtaccagcattcagcaaca
tcaggatccgcaccatcaagttctggaccttcggggtccacgccatctggttctgggtct
gcacagacggggtcatcccagcagtga
DBGET
integrated database retrieval system
