Prunus avium (sweet cherry): 110768925
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Entry
110768925 CDS
T05161
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
pavi
Prunus avium (sweet cherry)
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pavi04121
]
110768925
Enzymes [BR:
pavi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110768925
Ubiquitin system [BR:
pavi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110768925
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Helicase_C
zf-RING_UBOX
PHD_5
PHD
zf-C3HC4
zf-RING_2
ASH2L-like_WH
TPR_12
Vps39_2
TPR_2
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
110768925
NCBI-ProteinID:
XP_021828492
UniProt:
A0A6P5TLM4
LinkDB
All DBs
Position
Unknown
AA seq
1678 aa
AA seq
DB search
MGRRKQSRPNRSGGVILKSHSNADQAEVAEDKLSTEESRKNELDKVEKPYFVEVVRSCWV
SDEHLDIAEVVLTDLTWGEEFSGDGFGEDFNQDSYSLRFRVCNMNEHIIRIKCGGHWPVL
SSADISLEFIKKRPTENMERLSVILSGSFDGPDEGISGLVHLASLKFMTLRPARRVGFAD
DMSTIRVRVEILKSAFDACESLLDTNTRQLWKKSMLNVMAWLHPEVMTSEARYGVSKSTE
MEADLHTQTGEANSGPSKHARFDVAGFYEAIKPSKADAMLQDDMPDLLPELKPYQRRAAY
WMVQREKGDAESLAEEEKSQFISPLCLPLEFLDTSSKIFYNPFSGSVSLHPQNLSAYVFG
GILADEMGMGKTVELLACIFAHRKSADEDNMFADSESQATEDLKVNIKRLKRERVECICG
AVSENRSYKGLWVQCDVCDAWQHADCVGYSEASNGKECGKSSVLNKYIRKKNTTTIVVRD
GKYICQLCSELIHATNSPIATGATLIICPAPILPQWHAEIMRHTRSGSLKTCIYEGVRGT
SFSNTSVINISELISADIVLTTYDVLKEDLSHDSDRHEGDRRLMRFQKRYPVVPTVLTRI
FWWRICLDEAQMVESNAGAATEMAMRLYAKHRWCITGTPIQRKLDDLYGLLRFLKACPFN
ASRWWVEVIRDPYERRDAGAMEFTHKFFKKIMWRSSKAHVADELQLPPQEECLSWLTLSP
TEEHFYQRQHETCVTYAREVIESLKDDILKRKVRGCSASNDSSDPFLTHAEAGKLLNTLL
KLRQACCHPQVGSSGLRSLQQYPMTMEEILMVLVGKTKMEGEEALRGLVVALNGLAGIAV
IEQNFPQALSLYKEALALAEEHSEDFRLDPLLNIHIYHNLAEILPLATNCCPSKEQFPGS
STEMASKIHGTEKCDQHVVKRRKLSGKDNFAIGAGNLLEGTSELSDNEQKYLSAFSDVSL
RTACDNIKQKYLSAFSSKLSTAQQEFKKSYTLVYNAISERKDLSAFWWLEALLHSEKSKG
CSSELTRKIEEALIGTLNNSKSSRIASRFQSISGLKYHIQTGLDQLEASRKLLLDRLLEI
DQTMEKPKEEDIQSVRYCRNCKAYDDGPLCVLCELDELFQGYEARLFRSEKVCGGMATSA
EEAVDLQKKNSALNRFYQNLSQPNKDLTSPSYKESKKRDVGKVVVSKSPSELEVVLGVIK
SHCKAQIGREGISEATKHLQILEGMRKEYGHARSLAIAQAQILQAYDEINMATSRLRLAE
NENDKSLDALSEHELPSANVLYTSDKFTSLQLLSCVKGKLRYLKGLVQAKQKTPLESPNH
SSVAEEAATMSTSTEQKDECILTGDKEACPVCQETLTIRKMVFPCGHVTCCKCLFAITEW
RLLNDKKVQDKWVKCPTCRQHTDVGNIAYADDGQSESSSSSMLHATQSREKGEASITVKG
SYGTKIEAVTRRILWIKTTDPEAKVLVFSSWHDVLNVLEHAFTANGITHIRMKGGRKSQV
SISEFKGEKRSTKGNHKIHGQEPEQRSVQVLLLLIQHGANGLNLLEAKHVILVEPLLNPA
VEAQAISRVHRIGQKNRTIAHRFIVKGTVEESIYKLNRSKNTTAFINGNTKNQDEPFLTL
KDIESLFATAPPAVPEADEKPAEGSDEKETESLRHLPPSVAAAIAAEKRQKEQHACSS
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgggtagaaggaagcaaagccggccgaaccgatccggtggggtaatattaaagagtcac
agtaatgctgatcaggcagaagttgctgaagataagctttcaaccgaggaatcacgaaag
aatgagctggataaagttgagaaaccatattttgtggaagttgttcggtcttgttgggtt
tcggatgagcaccttgatattgctgaagttgttttaacagatttgacttggggagaagag
ttttctggtgacggatttggtgaggattttaatcaggatagttactccttaaggtttcga
gtgtgcaacatgaatgagcatatcattcgtataaagtgtggtggtcattggcctgtgtta
tcctctgctgatatatctttggaattcattaaaaaacgtccaacagagaatatggaaagg
ttatctgtgattttatcagggagttttgatggaccggatgaaggtatctctgggcttgtt
cacttggcaagtttgaagtttatgacactgaggccagctcggagggttgggtttgcggat
gatatgtcaaccatcagggttagggtggagatacttaagagtgcatttgatgcttgtgag
tcactgctggacactaatactaggcaactctggaaaaagagtatgttgaatgtcatggct
tggcttcatcctgaagtaatgacttcagaggctaggtacggagtcagtaaatcaacagaa
atggaagctgatttgcatactcagactggagaggctaattcaggacctagtaaacatgca
aggtttgatgttgctgggttctatgaagccattaaaccatcaaaagcagatgcaatgctt
caagatgacatgccggatttgcttcctgaattgaagccatatcagcgccgtgcagcttac
tggatggtacagagagagaaaggagatgcagaaagtctggccgaagaggagaaaagtcag
ttcatatcacctttatgtttgcccttggaatttcttgacacaagttcaaaaattttctat
aacccattcagtggaagtgtttcgttgcatccacagaatttgtcagcttacgtctttggt
ggtattcttgcagatgagatgggcatggggaaaactgttgagcttcttgcttgcatattt
gctcatcggaagtcggcagatgaagacaacatgtttgctgattctgaatctcaagctacc
gaggatctgaaagtcaatattaaaagattaaaaagagagcgagttgaatgtatatgtgga
gctgtgagtgaaaataggtcatacaaaggattatgggtacagtgtgacgtatgtgatgca
tggcaacatgcagactgtgtgggttattcagaggcctctaatggaaaagaatgtggaaag
agttcagtgcttaataagtacataagaaagaagaatacaactacaatagttgtgagagat
gggaaatatatttgccagctatgctcagagctgatacatgctactaactctcctattgct
actggtgccactcttataatttgtccggctcctatattgccccaatggcatgctgaaatt
atgcgtcatacccgttcaggttccttaaaaacttgtatctatgaaggtgtgagggggact
tctttttcaaacacatctgtaattaatattagtgaactcatcagtgctgacattgtatta
acaacatatgatgtgcttaaagaggacctgtcacacgactctgataggcatgaaggtgat
cgacgcctcatgagattccaaaagagataccctgttgttccaactgttctgaccagaata
ttctggtggagaatttgtttggatgaggctcaaatggtggagagtaatgctggtgctgcc
acagaaatggctatgcggttgtacgctaagcaccgttggtgcattacagggactcctata
caacgcaagcttgatgacttatatggacttctacgatttcttaaagcatgccctttcaat
gcttctaggtggtgggtcgaagttatacgagatccatatgagaggagagatgcaggggct
atggaatttacacataaattcttcaagaaaatcatgtggcgatcttcaaaagcgcatgtc
gcagatgagttgcagcttcctcctcaggaggagtgcctttcttggctcactttatcccca
acagaagagcacttttaccaaaggcaacatgaaacttgtgttacttatgcccgagaagtc
attgaaagtttgaaagatgatattctgaaaagaaaagtcagaggctgttcagcatctaat
gattcatcagatcctttcctcacgcatgcagaggcaggaaagctgctgaacacactcttg
aagcttcgccaggcctgctgccaccctcaagtagggagctctgggcttcgctctctacaa
cagtaccccatgactatggaggaaatattaatggttcttgtaggtaaaacaaagatggaa
ggagaggaagcgctcaggggattagttgttgctctcaatgggcttgctgggatagctgta
attgagcaaaatttccctcaagctctatcactgtacaaggaagcattggctttagctgaa
gagcactctgaggatttccgcctggacccgttgttgaatattcacatttatcataatctt
gctgaaatacttccattggcaacaaactgttgcccctcaaaggaacagtttccgggtagc
tctacagaaatggcctccaagatacatggcactgaaaagtgcgatcaacatgtagtgaag
aggcgaaaactgagtgggaaagacaactttgccattggtgctggtaacttacttgaaggc
acatctgaattatcagataatgaacaaaagtacttgtctgcgttcagtgatgtatctttg
agaacagcctgtgacaatattaaacagaagtacttgtctgcgttcagctcaaagctatcc
acggctcaacaagagtttaagaagtcttacacactggtttataatgcaattagtgaaaga
aaagatctaagtgcattttggtggttggaagcccttcttcattctgaaaagagcaaaggc
tgctctagtgagttgaccagaaagattgaagaggccctcataggaactctaaacaattcg
aagtcatcgaggattgcgtcccgtttccaaagtataagtggactgaagtatcatatacag
actggtttggaccaattagaagcatctaggaagctgttacttgatcgactcttagaaatt
gatcagacgatggagaagccaaaggaggaggatattcaaagcgtgagatactgtcgaaat
tgcaaggcttatgatgatggtcccctgtgtgttctctgtgaattagatgagttgtttcag
ggttatgaagcaaggctctttcgtagtgaaaaagtatgcggggggatggctacatcagct
gaagaggctgtggatttgcagaagaagaactctgcacttaatcgtttttatcagaatctg
tcgcagccaaataaagatttaacgtcacccagttataaagaatcgaagaagagagatgtt
ggaaaagttgtggtttcaaaatctccatctgaattagaggtcgttcttggagttattaaa
agccattgcaaggcccaaatagggagggaaggtatatccgaagccaccaagcacctacag
attcttgagggcatgcgcaaggagtatggccatgcaagatcgttggcaatagcccaagcc
caaattctacaagcttatgacgaaattaatatggcaacctcaagattgcgcctggccgaa
aatgagaatgataaatctcttgatgctttaagtgaacatgaattaccttcagctaacgtc
ctatacactagcgacaagttcacatccttgcagttgttgtcttgcgtaaaagggaaactt
cgctatttaaagggtctggtacaagctaaacagaagacgccattggaaagtccaaatcat
tcctcagtagctgaagaggcagccaccatgtcaacttctacagaacagaaagatgaatgc
atacttactggtgataaagaagcatgcccagtttgtcaagaaacattaaccattcgaaag
atggtttttccatgtgggcatgttacatgctgtaaatgtttatttgcaattacggagtgg
agattacttaatgataagaaggttcaagataagtgggtaaaatgcccaacatgtcgacaa
catactgatgttggaaatattgcttatgctgatgatggacaaagtgaatcttctagttct
tctatgcttcatgcaacccaaagtcgtgaaaagggtgaagcatctattacagttaaaggt
tcatatggaaccaagattgaagcagtcacgagaagaatcctctggataaagactacagat
ccagaggctaaagtccttgttttctcaagctggcatgatgtccttaatgtattggagcat
gccttcactgctaatggcattacccacattcggatgaaaggaggaaggaaatcacaagtt
tccattagcgaattcaaaggagaaaagagaagcacaaaaggaaatcacaagatacatggc
caggaaccagaacaaagatctgttcaagtattactgctcttaattcaacatggagctaat
ggcctcaatcttctagaagcgaagcatgttattcttgttgagccacttctcaatccagca
gtagaagcacaagcaatcagccgggtacaccgaatcggacagaaaaataggaccatagct
catcgtttcatagttaaaggcacagttgaagagagtatatataaactcaatcggagcaag
aacaccactgccttcattaacgggaacacaaagaatcaagatgaaccttttttgacatta
aaagacattgaatccttatttgcaacagcaccacccgctgtaccagaagctgatgaaaag
ccagctgagggttccgatgaaaaggaaactgagagtctaaggcatttgcctccttctgtg
gctgctgctatagcggctgaaaagagacagaaggagcagcatgcatgttcttcatga
DBGET
integrated database retrieval system
