Pseudomonas avellanae: BKM03_11910
Help
Entry
BKM03_11910 CDS
T05369
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BKM03_11910 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_11910 (ligD)
Enzymes [BR:
pavl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BKM03_11910 (ligD)
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BKM03_11910 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AVB19868
LinkDB
All DBs
Position
2392437..2394992
Genome browser
AA seq
851 aa
AA seq
DB search
MAKPASEYTRKRNFDVTSEPAESKRKGKARSGALSFVIQKHDARNLHYDFRLELDGTLKS
WAVPKGPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYGGGDVIVWDRGIWQPHGDPHE
TYADGKLKFTLIGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDDIARPAAEYDITEAQPQ
SVISGAHIGAGRSAPAKSKAKAVEAKPARKPAPKKANVVFPDTLAPQLATLVDAPPAGDW
LYEIKFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDE
QGLPDFQGLQNAFDVGHSKNIFYYLFDMPFLSGEDLREVPLEQRRDALKQVLGSQRSRLL
RYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVGKRNADWIKLKCRLRQEFVIVGYTA
PQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKYVHKQLKPLHREESPLANKLTS
AQARGVQWVEPTLVCEAEFAQWTREGIVRQAAFFGLRSDKPATDVVREEAQPAKAASVTP
EPSRQPGKKTARGKVDVAGTGISHPQRVIDSKTGTKKIELAQFYESIADWVLPFLDKRPV
ALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQALVGAAQMGAIE
LHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEELGLEAFLKTSGGKGM
HIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIFIDYLRNSRGGST
VTAYSVRARPGLPVSVPIALHELTGLTSSAQWDITNLEQRLSQLKDDPWAGYSNRRKITQ
KMWKQLGAKRP
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccgccagcgaatacacgcgcaagcgcaacttcgacgtcacctccgagcct
gcagagagcaagcgtaaaggcaaagcgcggtccggtgcactgagctttgtgattcagaag
cacgatgcgcgcaacctgcattacgactttcggctggaactggacggtacgctgaagagc
tgggcggtgcccaaagggcccagcctggacccgaagcagaagcgtctggccgtgcatgtc
gaagatcacccgctggactacgcggcttttgaaggcagcattccgaaaggccagtacggc
ggaggcgatgtgatcgtctgggacaggggcatctggcaaccccatggtgatccacacgag
acctatgcggacggcaaactcaagttcaccctgatcggcgaaaaactcagtggcgagtgg
gcgctggtgcgcacccggctcaagggcagcggcagcaaagagcaatggctgctgatcaag
gaaaaggacgacattgcgcggcctgccgccgaatacgacatcaccgaggcgcaaccgcaa
agcgtgatcagtggggcgcacatcggggcagggcgttcagcgccagcaaagtccaaagcc
aaggccgttgaagcgaagcctgcgcgcaagcccgcgccgaaaaaggcgaacgtcgttttc
ccggacacgcttgcgccgcaactggcgacactggtcgatgcgccgcctgcgggcgactgg
ctgtacgagatcaagtttgacggctatcgcatgctgacgcgtatccagaacgatgaggtg
cgcctgttcacccgtaacggcaacgactggaccgatcagttgcccgagctgaccaaggcg
ctcaagggcttgaagttgcaggacagttggttcgacggcgaagtggtggtgctcgacgaa
caagggctgccggattttcaggggctgcagaatgcctttgatgtggggcacagcaaaaac
attttctattacctgttcgacatgccgtttctgagcggcgaagacctgcgcgaagtgcca
cttgagcagcgtcgcgacgctttgaaacaagttctcggcagccagcgcagccgcttgttg
cgctactcggatgcgtttcaggccgggcatcaggacattgtggccagtgctgccgcgatg
ggcctggagggcgtaatcggcaagcgcgctggcagcgcgtacgtcggcaagcgcaatgcc
gactggatcaagctcaaatgccggttgcgccaggaattcgtgatcgtcggctataccgcg
ccgcaaggcagccgctcggccttcggcgcgctgttgctggcggtcaatgacgatgcccaa
gggctggtgtatgccggacgggtcggcaccgggtttaccgaggcgacgctcaaatacgtg
cacaagcagctgaaaccgctgcaccgcgaggaatcgcccttggcgaataaactgacctcg
gcgcaggcgcgcggggtgcagtgggtcgagccgacgctggtttgcgaagctgaatttgcg
cagtggactcgcgagggcatcgtgcgtcaggcagcttttttcggcctgcgcagtgacaag
ccagctaccgatgtggtgcgtgaagaggctcagccagccaaggctgcgtcagtcactcct
gagccctccaggcagcccggcaagaaaactgcccgaggcaaggtcgatgtggcgggcact
ggcatcagtcatccgcagcgggtgatcgacagcaagaccggcacgaagaaaatcgagctt
gcgcagttttacgagtcgattgccgactgggttctgccgttcctggacaagcggccagtg
gcgttgctgcgctgtccggaaggcatcgacggtgagcagtttttccagaaacacgccgag
cacctcgccataccgcatatcaggcaactggatcgcgcgctggaccccggccacgccgcg
ctgatggagatcgactctgtgcaggcgctggtgggcgcggcgcagatgggcgctatcgag
ttgcacacctggggcgcgacccgcgacaggatcgaaacgccggatcattttgtgctggac
cttgatccagacccggcgctgccttggcgcagcatgattgaggccacgcaaatggttctc
gccgtactagaggagctggggcttgaagcttttctcaagaccagtggcggcaaaggcatg
cacattattgtgccgctggcgcgacaggctgagtgggacaccgtgaaagctttcgccaag
gccatcgccgagttcatcagccgtcagttgccggaacgcttcactgcaaccatgggaccg
aaaaaccgggtcggcaagattttcatcgattacctgcgcaacagtcgcggcggcagcaca
gtgactgcctattcggtacgcgcccggccgggtttgccggtctcggtgccgattgcgctg
catgagttgaccggcctgacatcgtcggcacaatgggacatcaccaaccttgagcaacgc
ttgagccagctcaaggatgatccatgggccggttacagcaaccggcgcaaaatcacgcaa
aaaatgtggaaacagctgggggctaaacggccttga
DBGET
integrated database retrieval system