Photorhabdus asymbiotica: PAU_04143
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Entry
PAU_04143 CDS
T00941
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
pay
Photorhabdus asymbiotica
Pathway
pay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAU_04143 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pay03021
]
PAU_04143 (rho)
03019 Messenger RNA biogenesis [BR:
pay03019
]
PAU_04143 (rho)
Transcription machinery [BR:
pay03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PAU_04143 (rho)
Messenger RNA biogenesis [BR:
pay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PAU_04143 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
CAQ86231
UniProt:
C7BQK1
LinkDB
All DBs
Position
complement(4810947..4812206)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAANIAHNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMSKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtatctgaattgattacactcggcgaaaat
atggggctggaaaatctggcccgtatgcgtaaacaagatattatcttctctatccttaag
cagcatgcgaaaagtggagaagacatcttcggggacggtgtgctggagatattgcaggat
ggatttggattcctccgttcagcagacagctcctaccttgccggtcccgatgatatctac
gtctctcccagccaaatccgccgttttaacctccgtaccggtgatacaatttcaggtaaa
atccgtccacctaaagaaggtgaacgctattttgcactgttgaaagttaacgaagttaac
tttgataaaccagaaaatgcccgcagtaaaattctttttgaaaacttaactcctttgcat
gctaataaccgcctgcgtatggaacggggtaatggttccactgaggatctgacggctcgt
gttctggatctggctgcaccgattggccgcgggcaacgtggtcttattgttgctccacca
aaagcgggtaagactatgttgctgcaaaatattgcggctaacatcgctcacaatcatcca
gattgtgtattgatggtacttctaattgacgagcgtccagaagaagtcactgaaatgcaa
cgtctggtgaagggtgaggttattgcttctacttttgatgagccggcttcccgtcacgtt
caggtggcagagatggtcattgagaaagcaaagcgtctggttgaacataaaaaagatgtg
attatcctgcttgattctattacccgtttggcacgtgcctataacacggttgttccggca
tccggtaaggtactgactggtggtgtagatgctaacgcgttgcatcgtccaaaacgtttc
ttcggggctgcacgtaatgtagaagagggtggaagcttgaccattattgctactgcattg
gtggatacaggctcgaagatggatgaagtgatttacgaagagtttaaaggcactggtaat
atggagttgcacctctcacgtaaaattgctgaaaaacgcgtcttccctgctattgattac
aaccgttccggtacacgtaaagaagagttacttaccacatctgaagaactacaaaagatg
tggattcttcgcaaaattattcacccaatgggagaaatagatgcgatggagttccttatc
aataaactggctatgagtaaaacaaacgacgatttctttgacatgatgaaacgttcgtag
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