Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a3098
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Entry
PSEBR_a3098 CDS
T01472
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSEBR_a3098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a3098
Enzymes [BR:
pba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSEBR_a3098
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSEBR_a3098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEA69405
UniProt:
F2KHW9
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All DBs
Position
3830045..3832012
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AA seq
655 aa
AA seq
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MANAESESARLSNAKSDATTARKAPQNRLPERLAPQLATPVEEPPTGEWRYEVQFHGYRL
LTRIEHGEVRLFNRNHQDWTERLKLHADALAGLNLGDSWLDGELVLLDETGHADFAALRQ
AFDISRTVDMVYFLFDAPFLNGADLRQAPVEERRAALKKALGNNASKRLRFSEWFSASQH
DMFESAIALSLDSVVGKRLGSPYMSQRSADWVKLKCRLRQAFIIVGFTRPQGKRSGFGAL
LLAVNGPSGLVYAGRVGTGFSQAQIKQLHAQLCAQQRETSPLALPLDGVRGRGVQWVEPG
LTCEVEFTEWSRDNQVRQAIFLDLSSTMPANKVVREQPLPIKPATPEPKRRSKARAAKVD
GVTITHADRVIDSVSGVQKAELAQYYLDIAPWILPHLKQRPVALLRAPDGIGEEQFFQKH
ADRLEIPHIKQLDPRLDPGHAALMEIDDIHALVSAAQMGTVELHTWTATHDRIETPDLFV
LDLDPDPSLPWSAMIEATHMTLAVLDDLGLQAFLKTSGGKGMHVIVPLTRSEGWDTTKAF
AKAISQFLTRQMPERITATMGPKNRVGKIFVDYLRNARGASTVAAYSVRARPGLPVSVPI
ARAELQTLRNAQQWDIYTALERAKGLSADPWEGYNHRQRITARMWEQLDAQKPTD
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgccgagagtgaatctgctcgtttgtccaacgccaagtcggacgctacgacg
gcccgcaaggcgcctcaaaaccgcctgcccgagcgcctggcgccgcaattggccacgccc
gtggaagaaccgcccaccggcgaatggcgctatgaagtccaattccacggttatcgactg
ctgacccgcatcgaacatggcgaagtccgcttgttcaatcgcaatcaccaggactggacc
gagcgactgaagctgcatgccgacgccctggccgggttgaacctgggggacagttggctc
gacggcgaactggttctgctcgatgagaccggccacgccgatttcgcggccctgcgccag
gccttcgacatcagccgcaccgtcgacatggtgtatttcctgttcgatgcgccgttcctc
aatggtgccgacctgcgccaggcgccggtggaagagcgtcgtgcagccctgaaaaaagcc
ctcggcaacaacgccagcaagcgcctgcgcttttccgagtggttttccgccagccagcac
gacatgttcgaaagcgctatcgcgctctcactggacagcgtggtcggcaagcgcctgggc
agcccctatatgtcccagcgaagcgccgattgggtaaaactcaagtgccggttgcgccag
gctttcatcatcgtcgggttcacccgcccccaaggcaagcgcagcggtttcggcgcgctg
ttgctggctgtcaacgggccctcggggctggtgtacgccggtcgggtcgggacagggttc
agccaggcgcaaatcaaacaattacacgcgcaactgtgcgcgcagcagcgcgagacttcg
ccactggcgttgccactcgacggtgtgcgggggcgcggcgtgcaatgggtcgagcccggc
ctgacctgcgaggtcgagttcacagaatggagccgcgacaaccaggtgcgccaggctatt
ttcctggacttgtcgagcactatgccggccaacaaggtagttcgcgagcagcccctgccg
ataaagcccgcgacgccagaacccaagcgtcgcagcaaagcccgcgcggccaaagtcgac
ggcgtgacaatcacccacgccgatcgggtcatcgacagtgtcagcggtgtgcaaaaggcc
gagctggcgcagtattacctggacatcgccccgtggatcctgccgcacctcaagcagcgg
ccggtcgcgctgctgcgggcaccggacggtatcggcgaagagcagttctttcaaaaacac
gccgatcgcctggagattccccatatcaaacagctggatccgcgactggacccgggccat
gcagcgctgatggaaatcgatgacatccacgccctggtcagcgcggcgcagatgggcacg
gtggaactgcacacctggaccgcgacccacgaccggatcgagacccccgacctgtttgtc
ctggacctggacccggatccttcgctgccctggagcgccatgatcgaggcgacccacatg
accttggcggtgctcgacgacttgggtttgcaggcttttctcaagaccagcggtggcaaa
ggcatgcatgtgatcgtgcccttgacgagaagtgaaggctgggacaccaccaaggcgttc
gccaaggccatctcacagttcctgacccggcaaatgccagagcgcatcacggccaccatg
ggaccgaagaaccgcgtcgggaaaatattcgtcgactacctgcgcaacgcccgcggcgcg
agcacggtggccgcctactcggtgcgcgccaggcccggcctgccggtctcggtgccgatt
gcccgggccgaactgcagaccctgcgcaacgcccagcaatgggacatctataccgccctg
gaacgagccaagggcttgagcgccgatccttgggaaggctacaaccaccgccagcggatc
acggccaggatgtgggagcaactggatgcgcaaaaacccaccgactga
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