Pogonomyrmex barbatus (red harvester ant): 105429417
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Entry
105429417 CDS
T04903
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105429417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105429417
Enzymes [BR:
pbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105429417
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105429417
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
nSTAND3
AAA_22
ResIII
ATPase
AAA_14
NB-ARC
AAA_19
NACHT
PhoH
Rad17
RsgA_GTPase
PNPase
ATPase_2
ABC_tran
AAA_16
T2SSE
HPIH
Motif
Other DBs
NCBI-GeneID:
105429417
NCBI-ProteinID:
XP_011640718
UniProt:
A0A6I9WE58
LinkDB
All DBs
Position
Unknown
AA seq
962 aa
AA seq
DB search
MSHRHGFRGIPHSFARRNREEQSQSSPSQRGMAHNRRPPGLRGKEIGLYYRNKNRERQKE
TSMLKFSHEVQQRIEAILNKSKSFYDSFSHENSNLGHDKYHKIHDIQFKRKFLNIVYGDM
QENIAKAMNLTSKLQRNSNLDKILQDEYKEKQSQNDYQNMLAFRSKLPAYKKKSEILQLI
EDNQVVVISGETGCGKTTQVAQFILDDELETGNGSITRIVCTQPRRISAISVAERVAAER
AEKLGKSVGYQIRLEKISSREQGSILFCTTGILLQFMKIDPALKSFSHVILDEIHERTTE
SDFVITLLKQVIPKRTDLKVLLMSATLNAESFSKYYNNCPMLHIPGFTFPVKEFYLEDIL
SLLDHKFPEPPPEPTGYRKHLKRYKEQQHKKEEFLDVIQPYVRQLIAEKKHDIRVIQQLR
NPLSEDLSLILIEKLVRYICNTKDPGAILIFLPGMMDISNLCKMMLGPDYPSDKYIIYPL
HSRMPTVDQKLIFREPPRGVRKIIIATSIAETSITIEDVVYVIDSGRTKFGKFDVEKNIQ
TLEPEWVSLANAKQRRGRAGRVKSGECYHMYTKAREMTFAQYPLPEMLRTRLEEVILQIK
ILQLGKVKQFLATVMDPPDLKAIHLSLNLLETLNALDEHENLTPLGYHLAHLPLDPRTGK
MILWGALFSCAEPIFAIAASLTFKDAFYCPLGKEEIANSKKLELSMEQFSDHVALAEALR
RYEATRQRGNARQFCRDYFLSFNTLKLLSEMKTQFAQYLCEMKFLDSENPSDKNANINSD
NIALIKAIVCAGLYPNVAVVRKITKNGPIAWTPEDGSVRIHPSSVNSKVPSFPSQYLTYF
TKQRSTAIFLHDTTCISVPMLLFAGQNMSIRRERGYYVINTLNFSENIICESNTAEMIQE
LQRALNSLLEYKITNPAMVSWSTFEGDLLNAIIQLVSQTNQEMGFDNMRENASLDEDSTD
EY
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatcgacatggttttagaggcattccacattccttcgcgcgtcgtaacagagaa
gaacagtcacagtcatctccatcccaacgtggaatggcacacaatcgaagacctcctggg
ctaagaggaaaagaaataggattatattacagaaacaaaaatagagagagacaaaaggag
acttcaatgctcaaattttcacatgaagtacagcaaagaattgaagctatattgaacaag
tccaagagcttttatgattcattttctcatgaaaattccaaccttggacatgacaaatat
cataaaattcatgatattcaatttaaaagaaaatttttaaacattgtatatggtgatatg
caggaaaacattgccaaagctatgaatttgacatcaaagttgcaaagaaatagtaacttg
gataaaatattacaagatgaatacaaagaaaagcaaagtcagaatgattatcaaaatatg
ttggcatttcgatcaaaattaccagcatataaaaaaaaatcagaaatattgcagttgatt
gaagataatcaagttgttgttattagtggggaaactggctgtggtaaaactacacaagtc
gcacaattcatattggatgatgaattggaaactggaaatggtagcattactcgaatagtt
tgcacacagcctagaagaatctcagctatttctgttgccgagcgagtagctgcagaaaga
gcagagaagcttggaaaatctgttggttatcaaatacgacttgaaaaaatttcctcacgc
gaacaaggaagcatattgttttgtactactggtatattattgcaatttatgaagattgat
ccagcattaaaaagtttctctcatgtaatactggatgaaattcacgagcgtaccacggaa
agtgattttgttattacattattaaaacaagttattccaaaaagaacagatttgaaagtt
cttttgatgagtgcaacattgaatgccgaaagcttttcaaaatattataacaattgtcca
atgttacacataccaggattcacctttcctgtaaaggaattttatttagaagatattttg
tcacttttagatcataaatttcctgagccaccaccagaacctacaggctacaggaaacat
ttgaaaagatacaaagaacaacaacataagaaagaagaattcttagatgtaatacaacct
tatgttagacaacttatagctgaaaagaaacatgacatacgtgttattcagcaattacgg
aatccgcttagtgaagatctttcattgattctaatagaaaaactagttagatatatttgt
aatacgaaagatcctggagctattcttatttttttacctggtatgatggatatatcaaac
ttgtgtaaaatgatgttagggcctgattatccaagtgacaaatacatcatttatcctctt
cattcacgcatgcctacagttgatcagaaacttatatttagagaacctcctcgtggcgtt
cgtaaaataattattgcaacttcaatcgctgaaacgtcaataactatagaagatgttgtg
tatgtaatagatagcggaagaacaaagttcggaaaatttgatgtggaaaaaaatattcag
actttagagcctgaatgggtatccttagctaatgctaagcaaagacgtggtagagctggc
agagttaaaagtggggagtgctatcatatgtatacaaaagctcgagaaatgacatttgct
caatatccattgccagagatgttgagaacacgcttagaggaggtaattttgcaaataaaa
attttgcagctgggaaaagtcaaacagtttctagctactgtcatggatccgccagattta
aaagctattcatctgtctctcaatttacttgaaacacttaatgctcttgatgaacatgag
aatttgactcctttgggttatcatttagcacatttaccacttgatcccagaacaggaaaa
atgatcctatggggtgcattgttctcttgtgccgagccaatatttgctattgctgctagt
ctcacatttaaagatgctttttattgtccactggggaaagaagaaatagctaatagtaaa
aagctggaacttagcatggaacaatttagtgatcatgttgctctcgcggaagctctaaga
agatatgaagctacacgtcaaagaggaaatgctcgccagttttgtcgagattatttcttg
tcttttaatacactgaaacttctttccgaaatgaaaacgcaatttgctcaatatttatgc
gagatgaaatttctggatagcgaaaatccgagtgataaaaatgccaacataaattcggat
aacatagcgttaataaaagccattgtctgcgcaggattatatcctaatgtagctgttgta
aggaaaattactaaaaatggaccaattgcttggacgccggaagatggtagcgtacgtata
catccgtcgagcgtaaacagcaaagttccctcatttcctagtcagtacttgacatacttc
acgaaacagcgttctactgcgatatttttacatgacactacatgtataagtgtaccaatg
ttattgtttgccggacagaatatgtcgataaggcgagaaagaggatattatgtaattaat
acattgaatttttcggaaaatattatttgtgaatcgaacactgcggaaatgatacaggaa
cttcaacgtgctctaaatagtttactggaatataagattacgaatccagcaatggtatct
tggtcaactttcgaaggagatttgttaaatgcaatcatccaactggtatctcagacaaat
caagaaatgggttttgataatatgcgcgaaaatgcatctttggacgaagattctactgat
gaatattga
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