Pseudomonadaceae bacterium T75: OS670_02655
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Entry
OS670_02655 CDS
T08742
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbau
Pseudomonadaceae bacterium T75
Pathway
pbau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OS670_02655 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbau03400
]
OS670_02655 (ligD)
Enzymes [BR:
pbau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OS670_02655 (ligD)
DNA repair and recombination proteins [BR:
pbau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OS670_02655 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Tudor_3
Motif
Other DBs
NCBI-ProteinID:
WAD27229
LinkDB
All DBs
Position
583054..585576
Genome browser
AA seq
840 aa
AA seq
DB search
MALDEYNRKRDFSATPEPGGTPAGRRGKQAALQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPKARRLAVHVEDHPLEYATFEGSIPEGHYGAGDVIVWDRGVWIPQGDPEEGY
RKGKLKFALEGEKLSGSWNLVRTRMDGNKEQWFLIKSNDETARPEGEYDIVREQPDSVLS
DRTLIPRQRGKAKAEAAAKPAKTPARRRSRKAEEPATTLSGARPAPLPESLKPQLATLVE
SVPDGDWRYEIKFDGYRILARIESGQVRLFTRNGHDWTAKMPQQAKALAALGLESAWLDG
EVVVPNEEGTPDFQALQNAFEAGRSGRIVFYLFDLPYLNGMDLREVPLEERRAALRQVLE
TGTSDLLRFSADFTEQPDSILESACQMKLEGLIGKRAGSSYVSRRSSSWVKIKCKNRQEF
VIVGFTDPKGARSGFGALLLGLHDEQGELRYAGKVGTGFNQATLKSLHAKLEPLVVKRCP
LDKPPPAAEVRGAHWLKPELICEVAYAEMTRQGVVRHSVFHGLRADKPARAITHERPVST
PAKKSDAIRISNPERIIDQSIGATKMELARFYAEIAPWALPHLRHRPLALVRAPEGIEGE
LFFQKHTEKLSIPHITQLDRALYPEHAALMTIDSVEALIGAAQMGTIELHTWNALAPELD
HPDRFVLDLDPDPALPWKRMVEATQLTQTLLDEIGLQSFLKTSGGKGLHILVPLQPVHDW
SEVKGFSQAIARYLAKLLPQHFSAVSGPKNRIGRIFIDYLRNSQGASTVAAYSVRAREGL
PVSVPIHRDELAELKGANLWNIRNLMLRLEEQGNDDPWSGIDQTGQRITADMRERLGLKP
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggccctggatgagtacaaccgcaagcgcgatttcagcgcgacccccgaacccggcggc
acacccgcaggcaggcgcggcaagcaggcggcgctgcagtactgcatccagaagcacgac
gccacgcggttgcattacgacttccgcctggagctggacggcaccctgaaaagctgggcg
attcccaaggggccgtcgctcgaccccaaggccaggcgcctggcggtgcacgttgaggat
catccgctcgaatacgccaccttcgaaggcagcattcccgaagggcactacggtgccggt
gatgtgatcgtctgggatcgcggcgtgtggataccgcagggcgacccggaggagggctat
cgcaagggcaagctgaagtttgcgctcgagggggaaaagctctcaggaagctggaacctg
gtgcgcacgcggatggacggcaacaaggaacagtggttcctgatcaaatccaacgacgag
acggcgcggccggaaggcgagtacgacatcgtccgcgagcagccggacagcgtgctcagc
gaccgcaccctgatcccacgtcagcgtggcaaggcgaaggccgaagccgcagccaagccg
gcgaagacacctgcgcggcgccgcagtcgcaaggcagaagaacctgccaccacgctttcc
ggcgctcgcccggcgccgctgccggaaagcctgaagccgcagctggcgacgctggtcgag
tcggtgcccgatggcgactggcgctatgagatcaaattcgacggttaccgcatcctggcg
cgaatcgagtcgggccaggtgcggctgttcacccgcaacggccatgactggacggcgaag
atgccgcagcaggcaaaggcgctggcggcgctggggctggaatccgcctggctcgacggc
gaggtggtggtgcccaacgaggagggcacgccggatttccaggccttgcagaacgccttc
gaagccggccgcagcggccgcatcgttttctacctgttcgacctgccttatctgaacggc
atggacttgcgcgaagtgccgctcgaagagcgtcgggcggcgctgcgtcaggttctggaa
accgggacgagcgatttgctgcgcttttccgccgacttcaccgaacaaccggacagcatc
ctggagagcgcctgccagatgaagctcgaagggctgatcggcaagcgcgccggcagcagc
tacgtctccaggcgcagcagcagttgggtgaagatcaagtgcaagaaccggcaggagttc
gtcatcgtcggcttcaccgaccccaagggggcgaggagcgggttcggtgcattgctgctc
ggcctgcacgatgaacagggcgaactgcgttacgccggcaaggtcggcaccggtttcaac
caggccacgctgaaaagcctgcacgccaagctcgagccgctggtggtgaagcgttgcccg
ctggacaagcctccgccggcggcagaagtgcgcggcgcgcactggctcaagcccgagctg
atctgtgaagtggcctatgcggagatgacgcgccagggcgtggtgcgccattcggttttt
cacggcctgcgcgcggacaaaccggccagggcgatcacccacgaacgccccgtcagcacg
ccggcgaagaagagtgacgccatccggatttccaacccggagcgaatcatcgaccagtcg
atcggcgccaccaagatggaactggcgcgcttctatgccgaaatcgcaccctgggcattg
ccccacctgcgccataggcccctggcgctggtgcgcgccccggaaggtatcgaaggcgag
ctgttcttccagaaacacacggagaaactgagcattccgcacatcacccagctggaccgc
gcgctctatccggaacacgcggcgctgatgaccatcgacagcgtcgaggcgctgatcggt
gcggcgcagatgggcaccatcgagttgcacacctggaatgcgttggcgccggagctcgat
cacccggaccgcttcgtcctggatctcgaccccgatccggccttgccgtggaagcgcatg
gtcgaggcgacccagttgacccagaccctgctggacgaaatcggcctgcaatccttcctg
aaaaccagcggcggcaagggtttgcatattctggtgccgctgcagcccgtccatgactgg
agcgaggtgaagggtttcagccaggccattgcgcgctacctggcgaaactcttgccacag
cacttctcggcggtcagcgggccgaagaatcgtatcggccggatcttcatcgattacctg
cgcaacagccagggtgccagcaccgtggcggcctattcggtacgggcgcgcgaagggctc
ccggtgtcggtgcccatccaccgtgacgaactggcggaactgaagggcgccaatctctgg
aacatccgcaacctgatgctccggctggaagagcagggcaatgacgatccctggtcgggc
atcgaccagaccgggcaaaggatcaccgcggacatgcgcgaacgcctgggtttgaaaccc
taa
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