Pseudomonas brassicacearum DF41: CD58_15050
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Entry
CD58_15050 CDS
T03174
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CD58_15050 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbc03400
]
CD58_15050 (ligD)
Enzymes [BR:
pbc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CD58_15050 (ligD)
DNA repair and recombination proteins [BR:
pbc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CD58_15050 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHL34145
UniProt:
W8QD41
LinkDB
All DBs
Position
complement(3326731..3329358)
Genome browser
AA seq
875 aa
AA seq
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MSSKTLDDYNRMRDFAATPEPAAKRSRKSAKSAHALQFCIQKHDATRLHYDFRLELGGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQGDP
FEAYEKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDEAARPESDYDVVQEAPD
SVLSERTIVPKRRGKAATKAVKAVEKTAKAKSTKKASKTSLSGAVAGPIPETLKPELATL
VDSAPDGEWLYEIKFDGYRVMARIENGDVRLITRNGHDWTHKLPKQAAALAALGLESAWL
DGEMVVANEQGVPDFQALQNAFEVGSSGKIGYYLFDLPYLNGMDLRKVPVEQRRTALAAV
LEANEDPLLRFSDAFEETPEALLNSACQMQMEGLIGKRLGSAYVSRRSNDWIKLKCKNRQ
EFVVVGFSDPKGARSAFGALLLGLHDADSGELRYAGKVGTGFNETTLKSIYQQLLPLETK
KPAVVNPPTGYEAKGVHWLEPTLLAEVAFAEMTKDGSVRHAVFHGLRSDKPAKAITQELA
KPVKKPAEKRKSPAKQEPEATPSKPKAKAKPKAGQASAMDGKVRITHPERVIDPSSGTTK
LQLAEYYASVAEFILPELADRPVALVRAPDGIAGELFFQKNAERLAIPGITSLDKALTGQ
PVMIINNAEALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPALPWKSMVEATQLT
LSVLDELGLKSFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAVSG
PKNRVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPIFREEVAELKGANLWNVHNVHE
RLVEVGHEPWADLKKTRQSITADMRRRIGMKKTEK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcaagaccctggatgactacaaccgtatgcgcgatttcgccgccaccccggaa
ccggcagcgaaacgctcgcgcaaatcggcgaaaagcgctcacgctttgcaattctgcatt
cagaaacacgatgccacacggctgcattacgacttccgcctggagcttggcggcgcgctc
aagagctgggcggtgcccaaggggccgtccttggacccaaaggtcaagcgcctggcggtg
catgtcgaagatcatccactggattacgcgacgtttgaaggcagcatccccgaaggccac
tacggtgccggtgatgtcattgtctgggaccggggcgtgtggattccccagggcgatcct
tttgaggcctatgaaaaaggccgactcaagttcgagctgcaaggcgaaaagctcagtggc
ctgtggaacctggtgcgtacccacatgcccggcaagcaagagcagtggttcctgatcaag
catcaggacgaagcagcccgccccgaaagcgactacgacgtggtgcaggaagccccggac
agcgtgctcagcgagcgcaccatcgtgcccaagcgtcggggcaaggccgccaccaaagcc
gtgaaagccgttgaaaaaaccgccaaggccaagtcgacaaaaaaggcctcgaaaaccagc
ctcagcggcgcggtggccgggccgatccccgagacgctcaaaccggagctggcaacatta
gtggacagcgcccccgacggcgaatggctctacgagatcaagttcgacggttaccgggtc
atggcgcgtatcgaaaacggcgatgtcaggctcatcacccgtaacggccatgactggacc
cataaactgccgaagcaggccgcagccctggccgcgttgggcttggagtcagcctggctg
gacggtgagatggtcgttgccaacgaacagggcgtgccggactttcaggccctgcaaaat
gcctttgaggtcggcagcagtggcaagatcggctattacctgttcgacctgccttacctc
aatggtatggatctgcgcaaagtgccggtggagcagcggcgaaccgcactggccgccgtg
ttggaggctaacgaagatccgctgctgcgattctccgatgcctttgaagaaacccctgaa
gcgctgcttaacagcgcttgccagatgcagatggaagggctgatcggcaaacggttgggc
agcgcctatgtgtcccggcgcagcaacgattggatcaagctcaaatgcaagaaccgccag
gagttcgtggtggtcggtttcagcgaccccaagggggctcgcagtgccttcggcgccttg
ctgctggggctgcatgatgccgacagtggcgagctgcgctacgccggtaaggtgggtacc
gggtttaacgaaaccaccctcaagagcatctatcagcagttgttgcccctggagacgaaa
aagcccgccgtggtcaatccgcctaccggctacgaagccaagggcgtgcactggcttgaa
ccgaccttgctggccgaagtggcgtttgccgagatgaccaaggacggctcggtgcgccat
gcagtgttccatggtttgcgcagcgacaagccggccaaggcgattacccaggagttggcg
aaaccggtgaaaaagcccgccgaaaagagaaaatccccagccaaacaagaacccgaagcg
accccgagcaagcccaaggcgaaagccaaacccaaagccggtcaggcgtcggccatggac
ggcaaggtgcgcatcacccatccggaacgggtcatcgaccccagcagcggcaccaccaag
ctgcaactggccgagtattacgccagcgttgccgagttcatcctgccggaactggcggat
cgcccggtggcgttggtcagggccccggatggcatcgctggcgagttgttcttccagaag
aacgccgagcgtttggcgatccccggcattaccagcctggacaaggcgctgacggggcag
ccggtgatgatcatcaacaacgccgaggcgctgatcggtgcggtgcagatgagcacggtg
gagttgcatacctggaacgcgacctcagtcgatctggacaagccagaccgcttcgtcctt
gatctcgatccggacccggcgttgccctggaaaagcatggtcgaggccacgcaactgacg
ttatcggtgctcgacgaattggggctgaagtcgtttctcaagaccagcggcggcaagggt
attcatgtggtggtgccgctgacgcgcaaactgggctgggacgaggtcaagggcttcagc
catgccattgtcagccacatggccaagctgctgcctgaccgtttttcggcggtatccggg
ccgaaaaaccgggtagggcggattttcatcgactacctgcgtaacggcctgggcgctacg
accatctgcgcttacgccgcccgcacccgggaggggctgcccgtgtcggtgcccattttt
cgcgaagaagtggccgagctaaagggggcgaacctgtggaacgtgcacaacgtccatgag
cgcctggtggaagtcggtcacgagccatgggcagacttgaagaaaacccgccagagcatc
accgccgacatgcgtcggcggattggtatgaagaagactgagaagtaa
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