KEGG   Pseudomonas brassicacearum DF41: CD58_15050Help
Entry
CD58_15050        CDS       T03174                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pbc  Pseudomonas brassicacearum DF41
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pbc00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    CD58_15050 (ligD)
Enzymes [BR:pbc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CD58_15050 (ligD)
DNA repair and recombination proteins [BR:pbc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CD58_15050 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(3326731..3329358)
Genome map
AA seq 875 aa AA seqDB search
MSSKTLDDYNRMRDFAATPEPAAKRSRKSAKSAHALQFCIQKHDATRLHYDFRLELGGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQGDP
FEAYEKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDEAARPESDYDVVQEAPD
SVLSERTIVPKRRGKAATKAVKAVEKTAKAKSTKKASKTSLSGAVAGPIPETLKPELATL
VDSAPDGEWLYEIKFDGYRVMARIENGDVRLITRNGHDWTHKLPKQAAALAALGLESAWL
DGEMVVANEQGVPDFQALQNAFEVGSSGKIGYYLFDLPYLNGMDLRKVPVEQRRTALAAV
LEANEDPLLRFSDAFEETPEALLNSACQMQMEGLIGKRLGSAYVSRRSNDWIKLKCKNRQ
EFVVVGFSDPKGARSAFGALLLGLHDADSGELRYAGKVGTGFNETTLKSIYQQLLPLETK
KPAVVNPPTGYEAKGVHWLEPTLLAEVAFAEMTKDGSVRHAVFHGLRSDKPAKAITQELA
KPVKKPAEKRKSPAKQEPEATPSKPKAKAKPKAGQASAMDGKVRITHPERVIDPSSGTTK
LQLAEYYASVAEFILPELADRPVALVRAPDGIAGELFFQKNAERLAIPGITSLDKALTGQ
PVMIINNAEALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPALPWKSMVEATQLT
LSVLDELGLKSFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAVSG
PKNRVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPIFREEVAELKGANLWNVHNVHE
RLVEVGHEPWADLKKTRQSITADMRRRIGMKKTEK
NT seq 2628 nt NT seq  +upstreamnt  +downstreamnt
atgagtagcaagaccctggatgactacaaccgtatgcgcgatttcgccgccaccccggaa
ccggcagcgaaacgctcgcgcaaatcggcgaaaagcgctcacgctttgcaattctgcatt
cagaaacacgatgccacacggctgcattacgacttccgcctggagcttggcggcgcgctc
aagagctgggcggtgcccaaggggccgtccttggacccaaaggtcaagcgcctggcggtg
catgtcgaagatcatccactggattacgcgacgtttgaaggcagcatccccgaaggccac
tacggtgccggtgatgtcattgtctgggaccggggcgtgtggattccccagggcgatcct
tttgaggcctatgaaaaaggccgactcaagttcgagctgcaaggcgaaaagctcagtggc
ctgtggaacctggtgcgtacccacatgcccggcaagcaagagcagtggttcctgatcaag
catcaggacgaagcagcccgccccgaaagcgactacgacgtggtgcaggaagccccggac
agcgtgctcagcgagcgcaccatcgtgcccaagcgtcggggcaaggccgccaccaaagcc
gtgaaagccgttgaaaaaaccgccaaggccaagtcgacaaaaaaggcctcgaaaaccagc
ctcagcggcgcggtggccgggccgatccccgagacgctcaaaccggagctggcaacatta
gtggacagcgcccccgacggcgaatggctctacgagatcaagttcgacggttaccgggtc
atggcgcgtatcgaaaacggcgatgtcaggctcatcacccgtaacggccatgactggacc
cataaactgccgaagcaggccgcagccctggccgcgttgggcttggagtcagcctggctg
gacggtgagatggtcgttgccaacgaacagggcgtgccggactttcaggccctgcaaaat
gcctttgaggtcggcagcagtggcaagatcggctattacctgttcgacctgccttacctc
aatggtatggatctgcgcaaagtgccggtggagcagcggcgaaccgcactggccgccgtg
ttggaggctaacgaagatccgctgctgcgattctccgatgcctttgaagaaacccctgaa
gcgctgcttaacagcgcttgccagatgcagatggaagggctgatcggcaaacggttgggc
agcgcctatgtgtcccggcgcagcaacgattggatcaagctcaaatgcaagaaccgccag
gagttcgtggtggtcggtttcagcgaccccaagggggctcgcagtgccttcggcgccttg
ctgctggggctgcatgatgccgacagtggcgagctgcgctacgccggtaaggtgggtacc
gggtttaacgaaaccaccctcaagagcatctatcagcagttgttgcccctggagacgaaa
aagcccgccgtggtcaatccgcctaccggctacgaagccaagggcgtgcactggcttgaa
ccgaccttgctggccgaagtggcgtttgccgagatgaccaaggacggctcggtgcgccat
gcagtgttccatggtttgcgcagcgacaagccggccaaggcgattacccaggagttggcg
aaaccggtgaaaaagcccgccgaaaagagaaaatccccagccaaacaagaacccgaagcg
accccgagcaagcccaaggcgaaagccaaacccaaagccggtcaggcgtcggccatggac
ggcaaggtgcgcatcacccatccggaacgggtcatcgaccccagcagcggcaccaccaag
ctgcaactggccgagtattacgccagcgttgccgagttcatcctgccggaactggcggat
cgcccggtggcgttggtcagggccccggatggcatcgctggcgagttgttcttccagaag
aacgccgagcgtttggcgatccccggcattaccagcctggacaaggcgctgacggggcag
ccggtgatgatcatcaacaacgccgaggcgctgatcggtgcggtgcagatgagcacggtg
gagttgcatacctggaacgcgacctcagtcgatctggacaagccagaccgcttcgtcctt
gatctcgatccggacccggcgttgccctggaaaagcatggtcgaggccacgcaactgacg
ttatcggtgctcgacgaattggggctgaagtcgtttctcaagaccagcggcggcaagggt
attcatgtggtggtgccgctgacgcgcaaactgggctgggacgaggtcaagggcttcagc
catgccattgtcagccacatggccaagctgctgcctgaccgtttttcggcggtatccggg
ccgaaaaaccgggtagggcggattttcatcgactacctgcgtaacggcctgggcgctacg
accatctgcgcttacgccgcccgcacccgggaggggctgcccgtgtcggtgcccattttt
cgcgaagaagtggccgagctaaagggggcgaacctgtggaacgtgcacaacgtccatgag
cgcctggtggaagtcggtcacgagccatgggcagacttgaagaaaacccgccagagcatc
accgccgacatgcgtcggcggattggtatgaagaagactgagaagtaa

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