Paenibacillus borealis: PBOR_05795
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Entry
PBOR_05795 CDS
T03324
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbd
Paenibacillus borealis
Pathway
pbd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PBOR_05795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbd03400
]
PBOR_05795
Enzymes [BR:
pbd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PBOR_05795
DNA repair and recombination proteins [BR:
pbd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PBOR_05795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIQ56504
UniProt:
A0A089MIW8
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All DBs
Position
complement(1320138..1321085)
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AA seq
315 aa
AA seq
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MQPVIPFEPVLAARLPEGDEWIAQIKWDGVRMLSYYDGSHAELINRRGNRRTLQYPELAR
PEAYCRADSVILDGEIIALSGGKPSFHEVMRRDSLKNEAAIRAVSPQVPVLYMVFDILYC
NGIWLLDQPLSRRQQTLSEMLLPHPHVQNVPSYHEPAQLYAAAQKGGLEGIVCKELSSTY
APGGKDKRWQKCKIISDVTAVAGGVTFRDGLVNALLFGLYDDAGKLHYIGHAGAGKMTVQ
DWRNLTAQISGMITEQMPFAELPQRSKGSVWIKPELVFKLHYLEWNTSGTFRQPVIQSQV
ELPPLSCRMDQRTQT
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
ctgcagccggttattccattcgagcctgtgctggccgcccggctcccggagggcgatgag
tggatcgcccagatcaaatgggacggcgtgcggatgctctcctattatgatggaagccat
gctgagctgatcaaccggcggggcaaccggcgcacgctgcagtatccagagcttgccaga
ccagaggcgtattgccgggcggattccgtcattcttgacggtgagatcatcgcactcagc
ggcggcaagccctccttccatgaggtcatgcggcgggacagcctgaagaacgaggctgcg
atccgggcggtaagcccgcaggttccggtgctctacatggtcttcgatatcttgtactgc
aatggcatttggctgctggatcagccgttgtcccggcggcagcagactttaagtgaaatg
ctgctgccccatccccatgtacagaatgtgccgagctaccatgagcccgcacagctgtac
gccgccgctcagaagggcggtttggagggaatagtatgcaaggagctctccagtacctat
gccccgggcggcaaggacaagcgctggcagaaatgcaaaatcatctccgatgtcactgct
gtagccggcggggtcaccttccgtgacggactggtcaatgccctgctcttcggactgtat
gatgacgcgggcaagctgcactatatcggacatgccggagcaggcaaaatgaccgtccag
gactggcggaatttgactgcgcagatcagcggcatgattacagagcagatgccttttgcc
gagctgccgcagcgcagtaaaggctcggtctggattaagcctgagctggtgttcaagctg
cactatctggaatggaatacttccggaaccttccgccagccggttatacagtcacaggta
gagctccctccgctgtcctgccgcatggaccagaggacacagacgtag
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