Python bivittatus (Burmese python): 103064233
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Entry
103064233 CDS
T03091
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pbi
Python bivittatus (Burmese python)
Pathway
pbi03030
DNA replication
pbi03410
Base excision repair
pbi03420
Nucleotide excision repair
pbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103064233 (LIG1)
03410 Base excision repair
103064233 (LIG1)
03420 Nucleotide excision repair
103064233 (LIG1)
03430 Mismatch repair
103064233 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbi03032
]
103064233 (LIG1)
03400 DNA repair and recombination proteins [BR:
pbi03400
]
103064233 (LIG1)
Enzymes [BR:
pbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103064233 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
103064233 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
103064233 (LIG1)
DNA replication proteins [BR:
pbi03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
103064233 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
103064233 (LIG1)
DNA repair and recombination proteins [BR:
pbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
103064233 (LIG1)
NER (nucleotide excision repair)
Other NER factors
103064233 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
103064233 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
Motif
Other DBs
NCBI-GeneID:
103064233
NCBI-ProteinID:
XP_007437575
UniProt:
A0A9F2R5Y5
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MQSNIRSFFQPLARIKPEKEKAEDNHLEDVLTSQKKLVNGSEVYEDFPVNSASKKAAKVL
NSDDEEDSVELDGKDTQADDSKLEPDCVPEQKISEESISPSTSPTTSSSPTSSGIPRRKT
ARKQLPKRKPEEDVNSHNNSHESRSTKRWKEDHSRDDSKDENGEKSMEVEEVKSENAKLV
EHKTDRNVKEEETSDSPKSSSKPISSFFAPKKSSVKTEKKQAPIVSENMPVPKDLNKVSN
HESNSMADNFLKPSLTPEPPEYNPTKSSYHPVHDACWGPGQKVPYMAVARSFEYIEEESA
RLKIIETLSNLFRSVIVLSPQDLLPCVYLCLNRLGPAYEGLELGIGKTILMKALAQATGR
QLDQIKAEAAEKGDLGLVAENSRTTQGTVFAPPKLGAAAVFGKLQAIGHMAGSSSMNKKI
DIIKSLFVACRHSEARYVARSLEGKLRIGLAEQSVLSALAQAASLTPPGQKFPPDVLDAA
KGKSVETRKAWLDERALIVKQAFCELPNYDIIIPVLLEHGVESLPQHCKITPGIPLKPML
AHPTKGIGEVLKRFEEAAFTCEYKYDGERAQIHILENGEVHIYSRNQENNTTKYPDIVTR
IPKVKNSTVKSCILDAEAVAWDPVSKQILPFQVLTTRKRKDVDAAEIRVQVCVYAFDMLY
LNGMSLVQKPLSQRRTLLHNSFTEVEGQFLFATSMDTSNTDEIAEFLERSIKDSCEGLMV
KTLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGTYGGFLLACYD
EESEEFQSICKIGTGFTDEDLEKLHLSLKDCVTPQPRPYYRWGGTAEPDHWLEAQYVWEV
KCADLSISPIHRAASGLVDEEKGISLRFPRFLRIRDDKKPEEATSSAQVAELYRKQQQIQ
NQVSLEKDDDFY
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcaacataagatcattcttccagcctctggcacgaataaagcctgaaaaagaa
aaagcagaagacaaccacttggaagatgtgctcacttcacaaaagaaattagtaaatggt
tcagaagtctatgaagacttcccagtgaattctgcatctaaaaaagctgccaaggtactt
aatagtgatgatgaagaggattctgtggaattagatggaaaggatacacaagcagatgac
agcaagttggaacctgactgtgttcctgagcaaaagatctctgaggagagcatctctcca
agtaccagcccaactacctccagttcacccacatcttctggtattccaaggcgcaaaact
gcccgcaagcagctccctaaacgtaaaccagaggaagatgtcaacagccataataattcc
catgaaagtcgcagtaccaaaagatggaaggaagatcacagtagagatgattctaaagat
gaaaacggtgagaaatccatggaagtggaagaagtgaaaagtgaaaatgcaaaattggtg
gagcataaaacagacagaaatgtaaaggaagaagaaacctcagattcccctaagtcatct
agcaagcccatttctagtttttttgctcccaagaaaagttctgtgaagacagaaaaaaag
caagcacctatagtatcagaaaacatgccagtaccaaaggaccttaataaagttagtaat
catgagtccaacagcatggctgacaattttctcaagccatctcttacacctgaacctcca
gagtacaaccctacgaagagcagctatcatcctgttcatgatgcttgctggggccctggc
caaaaggtaccatacatggctgtggctcgttcttttgagtatattgaggaggaatctgcc
cggttgaaaattatagagaccctgagcaatctctttcgttctgtgattgtcctgtctcca
caagacctgctcccctgtgtctacctctgtctcaatcggttaggcccagcgtatgaaggc
ctagaattaggcattggcaaaaccatcctcatgaaagcgctggcccaagccacaggtcgg
caactggaccaaatcaaggcagaggcagcagagaagggagatctaggattagttgctgaa
aacagtcgcacaacacaaggaaccgtgtttgccccacccaagcttggtgctgctgctgtc
tttggcaaactgcaggcaattgggcacatggcaggaagctcttctatgaacaagaaaatt
gacattatcaagtctctgttcgttgcatgtcgccactcagaggctcgttatgttgctcgg
tcattagaaggaaagttacggattgggctagcagagcagtctgtcctctcagctcttgcc
caggcagcatcgctcactcccccaggacaaaaatttcccccagatgttttggatgctgca
aagggcaaatctgtagaaacacgcaaagcctggctggatgagagagccttgattgttaag
caggccttctgtgaactgccaaattatgacatcatcatacctgtcctcttggagcatggt
gtggagagcttgcctcagcactgcaagatcactccagggattcccctgaagcccatgctg
gctcatccaaccaaaggaattggggaggtattaaagcgctttgaagaggcagccttcact
tgtgaatacaaatatgatggggagcgggcacagatccacattctagagaatggagaagta
catatttatagccgaaaccaagagaacaacacaacaaagtaccctgatattgtcacccgt
attcccaaggtgaaaaacagcactgtgaagtcatgcatcttggatgcagaggcagtggcc
tgggaccctgtttcaaaacagatcctgccattccaagtattgaccacccgcaagcgcaag
gatgtggatgctgcagaaatccgagtgcaggtttgtgtgtatgcattcgacatgctctac
cttaatggaatgtctctagtccagaaacctctgtctcagcgccggaccttactgcataat
tctttcactgaggttgagggccagttcctctttgccacttccatggatactagtaatact
gatgagatagcagaattcctggaacgctctatcaaagactcatgtgaagggttaatggtg
aaaacactggaagtggatgctacatatgaaattgcaaagagatcacacaattggctgaag
cttaaaaaagattatctggaaggtgttggtgacacccttgatctggtggtgattggtgcc
tacctgggcaagggcaagcgggcaggcacgtatggaggtttccttctagcatgttatgat
gaggaaagtgaagagttccagagtatctgcaagattggcactggattcacagatgaggat
ttggagaaacttcatctctcactcaaggactgtgtgactccacagccacgaccatattat
cgttggggtggaacagctgaacctgatcactggttggaagcccagtatgtctgggaagtg
aagtgtgctgatttatccatttctcccatccacagagcagcatcaggtttggtggatgaa
gaaaagggcatctccttacgctttcccagattcctgcgcatccgagatgacaagaaacca
gaggaggccactagcagtgctcaggtggctgaactttatcggaagcagcagcagatccaa
aatcaagtatcactggaaaaagatgacgacttctactaa
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