Paraburkholderia bonniea: QS306_09525
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Entry
QS306_09525 CDS
T09664
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pbon
Paraburkholderia bonniea
Pathway
pbon02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbon00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QS306_09525 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbon03021
]
QS306_09525 (rpoD)
Transcription machinery [BR:
pbon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QS306_09525 (rpoD)
BRITE hierarchy
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GerE
Motif
Other DBs
NCBI-ProteinID:
WJF89361
LinkDB
All DBs
Position
1:complement(2194696..2196930)
Genome browser
AA seq
744 aa
AA seq
DB search
MPAQHAPVKVAKAAASAAKRPGARSSKEAAAARDDAAARKTQASTVQPAVVQQPRVETKA
GTANSMTKKLNEVPAGDNAAPSEEVAVVPAKVEKVKARDRRAKEKALLKDAFASTQPGTA
EELEERRAKLRALIKLGKERGFLTYAEINDHLPDNFAETEAIEGIISTFNDMGVAVYEQA
PDAETLLLNDNAPAASSDDEAEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREG
EIEIAKRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLIDANAEDADG
FSPQEAEAIESEPEEAEETEEDTPEEDDGTAQATANAAQMEALRRASLEKFASISEWFDK
MRRAFEKEGYKSKAYLKAQETIQTELMTVRFTARTVERLCDTLRAQVDEVRQVERQILHT
VVDKCGMPRAEFIARFPGNETDLKWADKIVAEGHAYSAILTRNIPAISEQQQRLLDLQAR
VVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI
LQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVA
PADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSDKLKSFLEGS
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgcagcacgcgccggtgaaggtggcgaaagccgccgcatctgccgctaagcgg
ccgggtgcaagaagttcaaaggaagcggctgccgcgcgggacgatgcggcagcacgcaag
actcaagcatccacggttcaaccggctgttgtccagcagccgcgagtcgagactaaagcc
ggtacggcgaactccatgacgaaaaagctgaacgaagtacctgccggggacaatgcggcc
ccgagcgaagaggttgccgttgtgcccgccaaagttgaaaaggtgaaggcgcgcgatcgc
cgcgccaaagaaaaggcattgctgaaagacgcttttgcctcgacccagccaggcaccgct
gaagagcttgaagaacgccgcgcgaagctgcgggcgttgatcaagctcggcaaggaacgt
ggctttctgacttacgctgaaatcaacgaccacctgcctgataacttcgctgaaaccgag
gcgattgaaggcatcatcagcacgttcaacgatatgggcgtggcggtttatgagcaggcc
ccggacgctgaaaccctgctgctgaacgacaatgcgcctgctgcttcatcggatgacgaa
gccgaagaagaagccgaagtagcgctgtccacggtcgattccgaatttggccgcactact
gacccggttcgcatgtatatgcgcgaaatgggcacggttgagctgctgacgcgcgaaggc
gaaattgaaatcgccaagcgcatcgaagatggcctgaagcatatggtgatggcaatttcc
gcttgccccacgacgattgctgacattctggcgatggcggagcgtgtggcgaatgaagaa
attcgcatcgacgagctggtagacggcctgatcgacgccaatgcagaggatgccgacgga
ttttcgccgcaggaagcagaagcgatcgagagcgagccggaagaagccgaagaaaccgaa
gaagacacgccggaagaagacgatggcacggcgcaagccacggccaatgcggcgcagatg
gaagcgttgcgtcgcgcatcactggaaaaattcgcgtcaatcagcgagtggttcgacaag
atgcgccgcgcgttcgagaaagaaggctataaatcgaaggcttatctaaaagcgcaggaa
accatccagactgaactcatgaccgtccgctttacggcgcgcacggtggagcgtctgtgt
gacacgctgcgcgcccaggtggacgaagtccgccaggttgagcggcaaattctgcatacg
gttgttgataaatgcggcatgccgcgcgctgaatttatcgcccgtttccctggcaatgaa
accgatctgaaatgggccgacaagattgtcgcggaaggtcatgcgtatagcgcgatcttg
acgcgaaatattccggctatcagcgagcaacagcagcggcttcttgatttgcaggcgcgc
gtggtgctgccgctcaaagacctgaaagagaccaatcgccagatggcggcgggcgaactg
aaggcgcggcaagccaagcgtgaaatgactgaggctaacttgcgtctcgtgatttcgatt
gcgaagaagtacacgaaccgtggcttgcagtttcttgacctgattcaggaaggcaatatc
ggcctgatgaaagcggtggacaagtttgaatatcgccgtggctacaagttttcgacttat
gcgacatggtggattcgccaggccattacacgctcgattgccgaccaggcgcgcacgatc
cggattccggttcacatgatcgaaacgatcaacaagatgaaccgtatttcacgccagatt
ctgcaggaaaccggacttgagccggatccagcaacgctggccgaaaagatggaaatgccg
gaagacaaaattcgcaagatcatgaagattgcgaaagagccgatttcgatggaaacaccg
attggtgatgacgatgattcccacctcggtgatttcattgaagacacgaatacggttgct
ccagctgatgcagcgcttcatgcgagcatgcgcgacgtcgttaaggatgtgcttgattca
ctgacaccgcgtgaggccaaggtgttgcgcatgcgctttggtatcgagatgagtacggat
cacacgctggaagaggtgggcaagcagtttgacgtgacgcgtgagcggattcgccagatc
gaggctaaggcactgcgcaagttgcgtcatccaagccgctcggacaagctgaagtcgttc
ctggaaggcagttaa
DBGET
integrated database retrieval system
