Paraburkholderia bryophila: NDK50_16040
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Entry
NDK50_16040 CDS
T08797
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry00540
Lipopolysaccharide biosynthesis
pbry01100
Metabolic pathways
pbry01250
Biosynthesis of nucleotide sugars
Module
pbry_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
NDK50_16040 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pbry01005
]
NDK50_16040 (rfaD)
Enzymes [BR:
pbry01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
NDK50_16040 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
pbry01005
]
Core region
NDK50_16040 (rfaD)
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
Polysacc_synt_2
KR
NAD_binding_10
adh_short
Motif
Other DBs
NCBI-ProteinID:
WCM18929
LinkDB
All DBs
Position
1:complement(3573693..3574685)
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AA seq
330 aa
AA seq
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MTVIVTGAAGFIGSNLVKALNERGEQRIIAVDNLTRADKFKNLVDCEIDDYLDKTEFVER
FKRGDFGKVRAIFHEGACSDTMETDGRYMMDNNFRYSRDVLDVCLAQNIQFLYASSAATY
GGSGRFVEEREVEQPLNVYGYSKFLFDQVIRRVLPTAKSQIAGFRYFNVYGPRETHKARM
ASVAFHNFNQFRAEGKVKLFGEYNGYAAGEQTRDFVSIEDVVKVNLFFFDNPDKSGIFNL
GSGRAQPFNDIASTVVNTLRALNNEPALSLADQVQRGLIEYIPFPDALRGKYQCFTQADQ
TRLRAAGYDAPFLSVQEGVDRYVHWLFGQV
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcatcgtcaccggcgcggccggctttatcggcagcaatctcgtgaaggcgctc
aacgagcgcggcgaacaacgcatcatcgccgtggataacctcacgcgcgccgacaagttc
aagaacctggtcgactgcgaaatcgacgactatctggacaagaccgaattcgtcgaacgc
ttcaagcgcggcgacttcggcaaggtacgcgcgattttccacgaaggcgcctgctcggac
acgatggaaaccgacggccgctacatgatggacaacaatttccgctatagccgcgacgtg
ctcgacgtctgcctcgcgcagaacatccagtttctgtacgcgtcgtcggcggcgacgtac
ggcggatcgggccgtttcgtcgaagagcgcgaagtcgagcagccgctgaacgtgtacggc
tattcgaagttcctgttcgaccaggtgattcgccgcgtgctgcccaccgcgaagagccag
attgccgggttccgttacttcaacgtctatgggccgcgcgaaacgcataaggcgcgcatg
gcgtcggtggcgtttcacaacttcaaccagttccgcgccgaaggcaaggtcaagctgttc
ggcgaatacaacggctatgccgcaggcgaacaaacgcgcgatttcgtttcgatcgaagac
gtggtgaaggtcaacctgttcttcttcgacaatccggacaaatcaggcatcttcaatctg
ggcagcggccgtgcgcaaccgttcaacgacatcgcgagtaccgtggtcaacacgctgcgc
gcgctgaacaacgaaccggcgttgtcgctcgcggaccaggtgcagcgcgggctgatcgaa
tacattccgtttcccgacgcgctgcgcggcaagtatcagtgcttcacgcaggccgatcag
accaggctgcgcgcggccggctacgacgcgccgttcctgagcgtgcaggaaggtgtcgac
cgctacgtccattggctattcggccaggtttaa
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