KEGG   Pseudomonas bijieensis: GN234_03430
Entry
GN234_03430       CDS       T07266                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pbz  Pseudomonas bijieensis
Pathway
pbz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pbz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GN234_03430 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbz03400]
    GN234_03430 (ligD)
Enzymes [BR:pbz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GN234_03430 (ligD)
DNA repair and recombination proteins [BR:pbz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GN234_03430 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QKS81055
UniProt: A0A6N1C994
LinkDB
Position
complement(841029..843656)
AA seq 875 aa
MSSKTLDDYNRMRDFAATPEPAAKRSRKSAKTAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKAKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQGDP
HEAYEKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDHAARPESEYDVVQAEPD
SVLSDRTLVPKRRGKAAATKAVKQPEKAAQPKSPKRSSKTTLSGAVAGPLPETLKPELAT
LVESAPDGEWLYEIKFDGYRVMARIESGDVRLLTRNGHDWTHKLPKQAEALIALGLESAW
LDGEMVVANDQGVPDFQALQNAFEVGSSGKIAYYLFDVPYLNGMDLRKVPVQERRAALAA
VLEPNKSPLLRFSDAFEETPEALLNSACQMQMEGLIGKRVGSAYVSRRSNDWIKLKCKNR
QEFVVVGFSDPKGARSAFGALLLGLHDADSGQLRYAGKVGTGFNETTLKSIYQQLLSLET
KKAAVVNPPTGYEAKGVHWLEPTLLAEVAFAEMTKEGSVRHAVFHGLRNDKPARDITQEL
AKPVKKTAAAKKTRAKDEPAVAPSKSTGGSKAKAKTPAMDGKVRITHPERIIDASSGTTK
LQLAEYYASIAEFILPELADRPVALVRAPEGIAGELFFQKNAERLAIPGITSLDKALTVQ
PVMIINNAEALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPALPWKSMVEATQLT
LSVLDELGLKAFLKTSGGKGIHVVVPLTRKLGWDEVKDFSHAIVSHMAKLLPDRFSAVSG
PKNRVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPIFREEVAELKGANLWNVHNVHE
RLAEVGHEPWADLKKTRQSITADMRRRIGMKKPKK
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgagcagcaagaccctggatgactacaaccgcatgcgtgatttcgccgccaccccggag
ccggcggcgaagcgttcacgaaaatcggcgaaaaccgcccacgcgttgcagttctgcatt
caaaagcacgacgcctcgcgcttgcattatgacttccgcctggagctggacggcgcgctc
aagagttgggcagtgcccaagggaccttccctggacccgaaagccaagcgcctggcggtg
catgtcgaagaccatccgctggattacgcgacgtttgagggcagcatccccgaaggccat
tacggcgccggtgacgtcatcgtctgggaccggggcgtctggattccccagggcgacccc
catgaggcctatgaaaaaggccggctcaagttcgagttgcaaggcgaaaagctcagcggc
ctgtggaacctggtgcgcacgcacatgcccggtaaacaggaacagtggttcctgatcaag
catcaggaccatgcggctcgccctgaaagcgaatatgacgtggtccaggccgagccggac
agtgtgctcagcgatcgcaccctcgtgcccaagcgccgcggcaaggccgctgcaaccaaa
gcggtgaaacaaccggaaaaggccgctcagccgaaatcgccgaaacgttcttcgaaaacc
acgctcagcggcgcggtcgccgggccgctgccggaaaccctcaagccggaactggcgacg
ctggtggaaagtgcgcccgacggcgaatggctctacgaaatcaagttcgacggttaccgg
gtcatggcgcggatcgaaagcggcgacgtcaggctgctcacccgcaatggtcatgattgg
actcacaaactgccaaaacaggccgaagccttgatcgcgttggggttggaatcggcctgg
ctcgacggtgaaatggtggttgccaacgaccagggcgttccggacttccaggccttgcag
aacgccttcgaggtcggcagcagcggcaagatcgcctattacctgttcgacgtgccttac
ctcaacggcatggatttgcgcaaagtaccggtgcaagaacgccgggccgcattggccgcg
gtgctggagcccaacaaaagccccttgttgcggttttccgatgccttcgaggaaacccct
gaggcgctgctcaacagcgcctgccagatgcaaatggaagggctgatcggcaagcgcgtc
ggcagcgcctatgtgtccaggcgcagcaacgactggatcaagctcaagtgcaagaatcgc
caggaattcgtggtggtgggtttcagcgaccccaaaggcgcgcgcagcgccttcggagcc
ttgctgctgggcctgcatgacgccgacagcggccagttgcgctacgccggcaaggtcggc
accgggttcaacgaaaccacccttaaaagcatctaccagcaattgctgtcgctggagacg
aaaaaggccgccgtggtgaacccgcccaccggttacgaagccaagggcgtgcactggctc
gaaccgacgctattggccgaggtggcctttgccgagatgaccaaggaaggctcggtgcgc
catgcggtcttccatggtttgcgcaacgacaagccggccagggacatcactcaggagctt
gccaaacccgtgaaaaaaaccgccgcagcgaagaaaacccgcgccaaggatgagcctgcc
gtggcaccgagcaaaagcacgggcgggtccaaggcaaaagccaagacaccggccatggac
ggcaaggtccgcatcacccatccggaacgaatcattgatgccagcagtggcaccaccaag
ttgcaactggccgaatactacgccagcattgccgagttcatcctgccggaactggcggat
cgcccggtggccttggtcagggcgccagaaggtatcgctggtgagctgttcttccagaaa
aacgccgagcgcctggcgattcccggcatcaccagcctggacaaggcgctgaccgtgcag
ccggtgatgatcatcaacaacgccgaggcgctgatcggcgcggtgcagatgagcacggtc
gaactgcacacctggaatgcgacttccgttgacctggacaagcccgatcgcttcgtcctc
gaccttgacccggacccggcgctgccctggaaaagcatggtcgaagcgacgcagctcacg
ctatcggtgctcgatgaattggggctcaaggcgttcctcaagaccagcggtggcaagggc
attcatgtggtggtgccattgacgcgcaaattgggttgggacgaggtcaaggacttcagc
catgcgattgtcagccacatggccaagttgttgccggaccggttttcggcggtgtccgga
ccgaaaaaccgggtagggcggatcttcatcgattacctgcgcaatggtttgggcgcgacc
accatctgcgcctacgccgcgcggacccgggaagggttaccggtgtctgtgccgatcttt
cgcgaggaggtggccgagctcaagggggcgaatctgtggaatgtgcacaatgttcatgag
cgtctggcggaggttggtcatgagccttgggccgacctcaagaaaacccgccaaagcatc
accgccgacatgcgtcggcggattggcatgaaaaagcccaagaagtag

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