Pseudomonas bijieensis: GN234_03430
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Entry
GN234_03430 CDS
T07266
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbz
Pseudomonas bijieensis
Pathway
pbz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GN234_03430 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbz03400
]
GN234_03430 (ligD)
Enzymes [BR:
pbz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GN234_03430 (ligD)
DNA repair and recombination proteins [BR:
pbz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GN234_03430 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QKS81055
UniProt:
A0A6N1C994
LinkDB
All DBs
Position
complement(841029..843656)
Genome browser
AA seq
875 aa
AA seq
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MSSKTLDDYNRMRDFAATPEPAAKRSRKSAKTAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKAKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQGDP
HEAYEKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDHAARPESEYDVVQAEPD
SVLSDRTLVPKRRGKAAATKAVKQPEKAAQPKSPKRSSKTTLSGAVAGPLPETLKPELAT
LVESAPDGEWLYEIKFDGYRVMARIESGDVRLLTRNGHDWTHKLPKQAEALIALGLESAW
LDGEMVVANDQGVPDFQALQNAFEVGSSGKIAYYLFDVPYLNGMDLRKVPVQERRAALAA
VLEPNKSPLLRFSDAFEETPEALLNSACQMQMEGLIGKRVGSAYVSRRSNDWIKLKCKNR
QEFVVVGFSDPKGARSAFGALLLGLHDADSGQLRYAGKVGTGFNETTLKSIYQQLLSLET
KKAAVVNPPTGYEAKGVHWLEPTLLAEVAFAEMTKEGSVRHAVFHGLRNDKPARDITQEL
AKPVKKTAAAKKTRAKDEPAVAPSKSTGGSKAKAKTPAMDGKVRITHPERIIDASSGTTK
LQLAEYYASIAEFILPELADRPVALVRAPEGIAGELFFQKNAERLAIPGITSLDKALTVQ
PVMIINNAEALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPALPWKSMVEATQLT
LSVLDELGLKAFLKTSGGKGIHVVVPLTRKLGWDEVKDFSHAIVSHMAKLLPDRFSAVSG
PKNRVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPIFREEVAELKGANLWNVHNVHE
RLAEVGHEPWADLKKTRQSITADMRRRIGMKKPKK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaagaccctggatgactacaaccgcatgcgtgatttcgccgccaccccggag
ccggcggcgaagcgttcacgaaaatcggcgaaaaccgcccacgcgttgcagttctgcatt
caaaagcacgacgcctcgcgcttgcattatgacttccgcctggagctggacggcgcgctc
aagagttgggcagtgcccaagggaccttccctggacccgaaagccaagcgcctggcggtg
catgtcgaagaccatccgctggattacgcgacgtttgagggcagcatccccgaaggccat
tacggcgccggtgacgtcatcgtctgggaccggggcgtctggattccccagggcgacccc
catgaggcctatgaaaaaggccggctcaagttcgagttgcaaggcgaaaagctcagcggc
ctgtggaacctggtgcgcacgcacatgcccggtaaacaggaacagtggttcctgatcaag
catcaggaccatgcggctcgccctgaaagcgaatatgacgtggtccaggccgagccggac
agtgtgctcagcgatcgcaccctcgtgcccaagcgccgcggcaaggccgctgcaaccaaa
gcggtgaaacaaccggaaaaggccgctcagccgaaatcgccgaaacgttcttcgaaaacc
acgctcagcggcgcggtcgccgggccgctgccggaaaccctcaagccggaactggcgacg
ctggtggaaagtgcgcccgacggcgaatggctctacgaaatcaagttcgacggttaccgg
gtcatggcgcggatcgaaagcggcgacgtcaggctgctcacccgcaatggtcatgattgg
actcacaaactgccaaaacaggccgaagccttgatcgcgttggggttggaatcggcctgg
ctcgacggtgaaatggtggttgccaacgaccagggcgttccggacttccaggccttgcag
aacgccttcgaggtcggcagcagcggcaagatcgcctattacctgttcgacgtgccttac
ctcaacggcatggatttgcgcaaagtaccggtgcaagaacgccgggccgcattggccgcg
gtgctggagcccaacaaaagccccttgttgcggttttccgatgccttcgaggaaacccct
gaggcgctgctcaacagcgcctgccagatgcaaatggaagggctgatcggcaagcgcgtc
ggcagcgcctatgtgtccaggcgcagcaacgactggatcaagctcaagtgcaagaatcgc
caggaattcgtggtggtgggtttcagcgaccccaaaggcgcgcgcagcgccttcggagcc
ttgctgctgggcctgcatgacgccgacagcggccagttgcgctacgccggcaaggtcggc
accgggttcaacgaaaccacccttaaaagcatctaccagcaattgctgtcgctggagacg
aaaaaggccgccgtggtgaacccgcccaccggttacgaagccaagggcgtgcactggctc
gaaccgacgctattggccgaggtggcctttgccgagatgaccaaggaaggctcggtgcgc
catgcggtcttccatggtttgcgcaacgacaagccggccagggacatcactcaggagctt
gccaaacccgtgaaaaaaaccgccgcagcgaagaaaacccgcgccaaggatgagcctgcc
gtggcaccgagcaaaagcacgggcgggtccaaggcaaaagccaagacaccggccatggac
ggcaaggtccgcatcacccatccggaacgaatcattgatgccagcagtggcaccaccaag
ttgcaactggccgaatactacgccagcattgccgagttcatcctgccggaactggcggat
cgcccggtggccttggtcagggcgccagaaggtatcgctggtgagctgttcttccagaaa
aacgccgagcgcctggcgattcccggcatcaccagcctggacaaggcgctgaccgtgcag
ccggtgatgatcatcaacaacgccgaggcgctgatcggcgcggtgcagatgagcacggtc
gaactgcacacctggaatgcgacttccgttgacctggacaagcccgatcgcttcgtcctc
gaccttgacccggacccggcgctgccctggaaaagcatggtcgaagcgacgcagctcacg
ctatcggtgctcgatgaattggggctcaaggcgttcctcaagaccagcggtggcaagggc
attcatgtggtggtgccattgacgcgcaaattgggttgggacgaggtcaaggacttcagc
catgcgattgtcagccacatggccaagttgttgccggaccggttttcggcggtgtccgga
ccgaaaaaccgggtagggcggatcttcatcgattacctgcgcaatggtttgggcgcgacc
accatctgcgcctacgccgcgcggacccgggaagggttaccggtgtctgtgccgatcttt
cgcgaggaggtggccgagctcaagggggcgaatctgtggaatgtgcacaatgttcatgag
cgtctggcggaggttggtcatgagccttgggccgacctcaagaaaacccgccaaagcatc
accgccgacatgcgtcggcggattggcatgaaaaagcccaagaagtag
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