Physeter catodon (sperm whale): 102973179
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Entry
102973179 CDS
T06011
Symbol
RXRB
Name
(RefSeq) retinoic acid receptor RXR-beta isoform X2
KO
K08525
retinoid X receptor beta
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad03320
PPAR signaling pathway
pcad04659
Th17 cell differentiation
pcad04919
Thyroid hormone signaling pathway
pcad04920
Adipocytokine signaling pathway
pcad04928
Parathyroid hormone synthesis, secretion and action
pcad05200
Pathways in cancer
pcad05202
Transcriptional misregulation in cancer
pcad05207
Chemical carcinogenesis - receptor activation
pcad05216
Thyroid cancer
pcad05222
Small cell lung cancer
pcad05223
Non-small cell lung cancer
pcad05226
Gastric cancer
pcad05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
102973179 (RXRB)
09152 Endocrine system
04920 Adipocytokine signaling pathway
102973179 (RXRB)
03320 PPAR signaling pathway
102973179 (RXRB)
04919 Thyroid hormone signaling pathway
102973179 (RXRB)
04928 Parathyroid hormone synthesis, secretion and action
102973179 (RXRB)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102973179 (RXRB)
05202 Transcriptional misregulation in cancer
102973179 (RXRB)
05207 Chemical carcinogenesis - receptor activation
102973179 (RXRB)
09162 Cancer: specific types
05226 Gastric cancer
102973179 (RXRB)
05216 Thyroid cancer
102973179 (RXRB)
05222 Small cell lung cancer
102973179 (RXRB)
05223 Non-small cell lung cancer
102973179 (RXRB)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
102973179 (RXRB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcad03000
]
102973179 (RXRB)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pcad03310
]
102973179 (RXRB)
Transcription factors [BR:
pcad03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
102973179 (RXRB)
Nuclear receptors [BR:
pcad03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
102973179 (RXRB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
102973179
NCBI-ProteinID:
XP_007107945
Ensembl:
ENSPCTG00005011572
UniProt:
A0A2Y9ETG3
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Position
18:complement(68531365..68538133)
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AA seq
540 aa
AA seq
DB search
MSWAARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAAVAAGEQQ
TPEPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGAAPPSPPGPPLPPSAAASLGGSG
APPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPE
DVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDL
TYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE
EMPVDRILEAELAVEQKSDQGVEGPGGTAGSGSSPNDPVTNICQAADKQLFTLVEWAKRI
PHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIF
DRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLET
YCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctgctcgcccgcccttcctcccccagcggcatgccgcagggcagtgtggg
ccggtgggggtgcgaaaagaaatgcattgtggggtcgcgtcccggtggcggcggcgacgg
ccctggctggatcccgcagcagcagcagcggcggcggcggtggcagccggagaacaacaa
accccggagccggagccggagccgggggaggctggacgggacgggatgggcgacagcggg
cgggactcccgaagcccagacagttcctctccaaatccccttccccagggggccgctccc
ccttctcctccggggccacccttacccccttcagcagctgcatcccttggaggctctggg
gctccacccccacccccgatgccacccccgccactgggctcccccttcccggtcatcagc
tcttccatggggtcccctggtctgccccctccagctcccccaggattctccgggcctgtc
agcagtccccagattaactcaacagtgtcgctccctgggggtgggtctggcccccctgaa
gatgtgaagccaccagtcttaggggtccggggcctgcactgtccaccccctccaggtggc
cctggggctggcaaacggctatgtgcaatctgcggggaccgaagctcaggcaaacactac
ggggtttacagctgtgagggctgcaaaggcttcttcaagcgcaccatccgtaaggacctg
acctactcgtgccgggacaacaaggactgcacggtggacaagcgccagcggaaccgctgt
cagtactgccgctatcagaagtgcctggccactggcatgaagagggaggcggtacaggag
gagcgtcagcgggggaaggacaaggatggggatggggagggggctgggggagcccccgag
gagatgcctgtggacaggatcctggaggcagagcttgctgtggagcagaagagtgaccag
ggcgttgagggtcctgggggaaccgcgggtagcggcagcagcccaaatgaccctgtgact
aacatctgccaggcagctgacaaacagctcttcacacttgttgagtgggcaaagaggatc
ccacacttttcctccttgcctctggatgaccaggtcatactgctacgggcaggctggaac
gagctcctcattgcctccttctctcaccgatccatcgatgtccgagacggcatcctcctc
gccacaggtctgcacgtgcaccgcaactcagcccattccgcaggcgtgggagccatcttt
gatcggtccctctccagggtgctgacagagctagtgtccaaaatgcgtgacatgaggatg
gacaagacagaacttggctgcctgagggcaatcattctgttcaatccagatgccaagggc
ctctccaaccccagcgaggtagaggtcctgcgggagaaagtgtacgcgtccctggagacc
tattgcaaacagaagtaccctgagcagcagggccggtttgccaagctgctcttgcgtctt
cctgctctcaggtccataggccttaagtgtctagagcatctgtttttcttcaagctcata
ggcgacacccccatcgacaccttcctcatggagatgcttgaggctccccaccagctggcc
tga
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