Physeter catodon (sperm whale): 102976284
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Entry
102976284 CDS
T06011
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad03030
DNA replication
pcad03420
Nucleotide excision repair
pcad03430
Mismatch repair
pcad03440
Homologous recombination
pcad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102976284 (RPA1)
03420 Nucleotide excision repair
102976284 (RPA1)
03430 Mismatch repair
102976284 (RPA1)
03440 Homologous recombination
102976284 (RPA1)
03460 Fanconi anemia pathway
102976284 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcad03000
]
102976284 (RPA1)
03032 DNA replication proteins [BR:
pcad03032
]
102976284 (RPA1)
03400 DNA repair and recombination proteins [BR:
pcad03400
]
102976284 (RPA1)
Transcription factors [BR:
pcad03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
102976284 (RPA1)
DNA replication proteins [BR:
pcad03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
102976284 (RPA1)
DNA repair and recombination proteins [BR:
pcad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
102976284 (RPA1)
MMR (mismatch excision repair)
102976284 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
102976284 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
102976284
NCBI-ProteinID:
XP_007123587
Ensembl:
ENSPCTG00005006013
UniProt:
A0A2Y9FHY8
LinkDB
All DBs
Position
14:92259118..92316679
Genome browser
AA seq
617 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPILQVINIRPIATGNNPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEEERLSSNCICQINRFIVNTLKDGRRVVILMELEVLKSAEEVGLKIGNPVPYNE
GHGQQPVVPPPVLAASPPASRPQQQSGSSGVGSTVSKTFGASKTFGKSGGTSLGNSSGGT
QAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDGHHLPTVQF
DFTGIGDLENKSKDSLVDIIGICKSYEDVTKITVKSNNREVSKRNICLMDMSGKVVNATL
WGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQ
ALAGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQSTAYLGELKEKNEQAFEEIFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYR
EYGRRLIVSIRRNAAAM
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccacctgagcgagggggccattgcggccataatgcaacagggagatacatcc
ataaaacccattctccaagtcattaacatccggcccattgctacagggaataatccaccc
cgttatcgactgcttatgagtgatggattgaatactctgtcttctttcatgttggcaaca
caattgaaccctcttgttgaggaagaacgattgtctagcaactgtatctgccagattaac
cgatttattgtgaacactctgaaagatggaaggagagtggttattttgatggagttagaa
gttttgaaatcagctgaagaagttggattaaagattggcaatccagtgccctataatgaa
ggacatggacaacagccagtagttcctcctccagtcttagcagccagtccaccagccagc
aggccccagcaacagagtgggagctcaggagtgggttccactgtatctaagacttttggt
gcctcaaagacatttggaaaatctggaggtaccagcctagggaacagctccgggggaaca
caggccaaagtggtacccattgccagcctcaccccttaccagtccaagtggactatttgt
gctcgtgttaccaacaaaagtcagatccgtacctggagcaattcccgaggggaagggaag
cttttctctatagaactagttgatgagagtggcgaaatcagagcgactgctttcaatgag
caagcggacaagttctttcctcttattgatgtgaacaaggtctattacttctctaaaggc
accctgaagatcgccaacaaacagttcacagccgtcaaaaacgactatgagatgaccttc
aataatgagacttctgtcatgccctgtgaagatggtcatcatttacccacagttcagttt
gatttcacagggattggtgacctagagaacaagtctaaagactcacttgtagacataatc
gggatctgcaagagctatgaagatgtcactaaaatcacagtgaagtctaacaacagagaa
gtctctaagaggaatatctgtttgatggacatgtcagggaaagtggtgaatgctactctg
tggggagaagatgctgatagatttgatggttctagacaacccgtgatggctatcaaagga
gccagagtttctgattttggtggacggagcctctctgtactgtcttcaagtaccgtcatt
gtgaaccctgacatcccagaggcctacaagcttcgtggatggtttgactcggaaggacaa
gccttagctggcgtttccatctctgatctaaagagtggaggaataggagggagcaacacc
aactggaaaactttatatgaggttaaatcagagaacttgggccaaggtgacaagcccgac
tattttagctccgtggcgacagtggtgtatcttcgcaaagagaactgtatgtaccaggcc
tgcccaactcaggactgcaataagaaagtgattgatcaacagaatggattgtaccgctgc
gagaagtgtgacagtgaatttcccaatttcaagtaccgcatgatcctgtcagtaaatatt
gctgattttcaagagaatcagtgggtcacatgtttccaggagtctgcagaggccatcctt
ggacaaagcactgcttatcttggggagttaaaagagaagaacgagcaagcatttgaggaa
attttccagaatgccaactttagatcgtttacattcaggatcagggtcaaattggagacc
tacaatgatgagtctcgaattaaggccaccgtgatggacgtgaagcccgtggactacaga
gaatacggcagaaggttgatcgtgagcatcaggagaaacgctgcggcgatgtga
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integrated database retrieval system
