Stutzerimonas chloritidismutans: LLJ08_10540
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Entry
LLJ08_10540 CDS
T07923
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pchl
Stutzerimonas chloritidismutans
Pathway
pchl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LLJ08_10540 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchl03400
]
LLJ08_10540 (ligD)
Enzymes [BR:
pchl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LLJ08_10540 (ligD)
DNA repair and recombination proteins [BR:
pchl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LLJ08_10540 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
UEG59606
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All DBs
Position
2278536..2281100
Genome browser
AA seq
854 aa
AA seq
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MALDEYQRMRDFAATPEPSGKARGRSRKVQSLQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPSVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPQGDPQEGY
RKGKLKFSLEGEKLAGSWNLVRTHMDGKKEQWFLIKSRDEAAREEGEYDVVTAEPNSVLS
DRTLVPRKRGPAKARVAESPAKPVKAPARKRASRKKSDAVKLEGAVPAELPETFKPQLAT
LVDAVPSGDWRYEIKFDGYRMLARIDAGKVALFTRNGHDWTAKMPQQAAALAGLGLESGW
LDGEVVVPNEEGAPDFQALQNAFEAGRSGSILYYLFDVPYLNGMDLRDVPLEQRRAALRE
VLEGSDSELLRFSDDFTEQPDSILESACQMKLEGLIGKRAGSSYTSRRSSSWVKIKCSNR
QEFIIVGYTEPKGTRTGFGALLLGLHDDSGKLLYAGKVGTGFNQATLKSLHKQLKKLETD
KSPLAKAAPVADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPADAITRERA
KPASRSSKAEQRQTDAIGSGRIKISSPERIIDPSSGITKIELARFYAQIAPWALPQLRAR
PLALVRAPEGITGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSAEALVGAAQMGT
IELHCWNAVAPELEHPDRFVLDLDPDPALPWKSMLEATQLTQTLLDEIGLTSFLKTSGGK
GIHIVVPLDPVHGWNEVKAFSQAIAKYLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGA
STVAPYSVRAREGLPVSVPIHREELADLKGANLWTVRNLLERLQELGDDDPWADMTRVRQ
TITAQMRERLGMPA
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgacgaataccagcgcatgcgcgattttgccgccactcccgagccgtcgggt
aaggcgcgcggcaggtcacgcaaggtccagagcctgcagtactgcatccagaaacacgac
gccacgcggttgcattacgactttcgcctggagctggatggcacgctgaagagctgggcg
atccccaagggccccagccttgacccgagcgttcgccggctggcagtgcatgtggaggat
cacccgctggaatatgccacgttcgagggctccattccggccgggcattacggcgcgggc
gatgtgatcgtctgggatcgcggcgtgtggataccgcagggtgatccgcaggagggctat
cgcaagggcaagctcaagttcagcctcgagggcgaaaaactcgccggcagctggaatctg
gtgcgaacgcacatggatggcaagaaggagcagtggttcctgatcaagtcccgtgacgag
gccgcgcgcgaggagggtgagtacgacgtcgtcaccgccgagccgaacagcgtgctcagc
gatcgcacgctggtcccacgcaaacgcgggccggccaaggctcgcgttgcggaatcgccg
gccaagccagtcaaggcgccggcaagaaagcgagcgtcacgcaagaagagcgacgcggta
aagctggaaggggcggtcccggccgaattgccggagaccttcaagccgcagctggcgacg
ctggtggacgccgtgccgagcggcgactggcgctacgagatcaagttcgacggctaccgc
atgctcgcccgtatcgacgccggcaaggtcgcgctgttcacccgcaacggccatgactgg
acggcgaagatgccgcagcaggcggccgcgcttgccggactcgggcttgaatccggctgg
ctcgacggcgaagtggtggtgccgaacgaggagggcgctccggacttccaggcattgcag
aacgcgttcgaagccggacgcagtggaagcattctctattacctgttcgacgtgccctat
ctgaacggcatggacctgcgcgatgtgccgctggaacagcgtcgcgcggcgttgcgtgaa
gtgctggaaggcagcgacagcgaattgctgcgtttctccgacgatttcaccgagcagccg
gacagcattctggaaagcgcctgccagatgaagctcgaaggcctgatcggcaagcgagcg
ggcagctcctatacctccaggcgcagcagcagctgggtcaagatcaagtgcagcaaccgg
caggaattcatcatcgtcggctacaccgagcccaagggcacgcgcaccgggttcggcgcg
ttgttacttgggctgcatgacgacagtggaaagctgctctatgcaggcaaggtcggcacg
ggcttcaatcaggccacgctgaaaagcctgcacaagcaattgaagaagctggaaaccgac
aaaagccctttggccaaggcggcacctgttgccgatgtgcgcggcgcgcaatggctcaaa
cccgaactgatgtgcgaagttgcctacgcggagatgacccgccaaggcgtggtccgccat
tcggtgttccatggcctgcgctcggacaaacccgccgacgccattacccgtgagcgggcc
aagcccgccagtcgtagcagcaaagccgagcagcggcagacagacgctatcggcagcggc
cggatcaaaatctccagtcccgagcggatcatcgaccccagcagcgggatcaccaagatt
gaactggcccgcttctacgcgcagatcgcgccctgggccctgccgcagctgcgagcgcgc
ccgctggccctggtgcgcgccccggagggcatcaccggcgagctgttcttccagaagcac
gccgacaaattggccatcccgcacatcacccaactcgacccggcgctagacccgaagcac
ggtgcgttactggtgatcgacagcgccgaagcgctggtcggcgccgcgcagatgggcacc
atcgagctgcactgctggaacgcggtagcgcccgaactggagcatccggatcgcttcgtg
ctcgacctcgacccggacccggcgctgccctggaagagcatgctcgaagccactcagctg
acccagacgctgctggacgagattggcctgacctcgttcctcaagaccagcgggggcaaa
ggcatccacatcgtcgtaccgctcgatccggtacacggctggaatgaggtgaaggccttc
agtcaggccatcgccaagtacctggcaaagctgctgccgtcgcatttttccgccgtaagc
gggccgaagaaccgggttggacgcatcttcatcgactacctgcgcaacagccgtggcgcc
agtacggtcgccccatattcggtgcgtgcccgcgagggcctgccggtctccgtgccgatc
caccgcgaagaactggcggacctcaagggcgccaatctctggaccgtacgcaatctgctg
gagcgcctgcaggaactgggcgacgacgatccctgggcggatatgacgcgggtcaggcag
accatcaccgcgcagatgcgcgaacgtctgggcatgccggcttaa
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