Pochonia chlamydosporia: VFPPC_05678
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Entry
VFPPC_05678 CDS
T09407
Name
(RefSeq) RNA interference and silencing protein
Organism
pchm
Pochonia chlamydosporia
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
ArgoL1
ArgoL2
PAZ
PNP_UDP_1
SKA2
Motif
Other DBs
NCBI-GeneID:
28848827
NCBI-ProteinID:
XP_022284275
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All DBs
Position
5:1262580..1268362
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AA seq
1505 aa
AA seq
DB search
MSSHQTGRGRGRYTDRGGGGGRGRGRGWEASLQVHDTSRAPRGRGRGRGGSWELQIYSQG
DQTAQVDTNVAQKETNYETAAKTVNKKKLAALGARYPPRPGFGTQGRAVVLWTNHLHLAF
DGNLQLFRYSIRILPEQGDRPPVGKKAKRVIQLLLEEHFPQYGQSIATDFKAILISKQNI
EVAEEYNVLYRSEDEEEPAPNAKRYRVQLDSTGSVTVSELTDYLTSSNFGALLSSKEETL
QALNIVLGHHSKDVPHIASVGANRHFDLTSPDKQNLGAGLLAIRGFFVSVRAATARLLVN
VQVKHGAFYVDYPLDRLMTEYMAVNGPNTARLANFVKRVSVNVTHIVRRNRAGEPIKRIK
VIRDFARVDDGRNQEHPPIVPHFGAGPRDVKFFVTDTAGSTAGPSRTVPGAGPSTTGKSK
KKKAAKGPTGPAVPTASQGRYVSVYDHFKNTYHITIRDPTLPVINVGSREMPSYLPPEVC
VVLPGQPANKQLTPSQLQQMIKFAVRRPAQNAQSITASGVRTLGVDPINSTLAAFGIHVS
RNLLAVPGRVLNCPAVKYKGDKTVASRLGSWNMQFVQFAVPKQLSRWTWLWISLQGMRDP
WRNIMELKSSLGAFRNVLQRLGLVTAECLDGIHITVNQDNADSEIDTAIQRFAKGKSIPP
QLLLVILPSDIAAIYKRVKADCDVRGGLLNVCVVAKKFFNANEQYYANVAMKVNLKLGGQ
NHYVDKSKLGILSEGKTMVVGIDVTHPSPGSSSQAPSVASIAASIDGNLAQWPADLRIQT
ARQEMVAGLDAMFQGRLRLWRKHNGRYPDNILVCRDGVSEGQYDQVLDQELPAMRSACKE
IYPADATKQGLPHFTIVIVGKRHNTRFYPTRTEDADRSANPQNGTVVDRGVTEAQNWDFF
LQAHAAIQGTARPAHYYTILDEIFAARPVKLPLRNSADVLEDLMHNMCYLFGRATKAVSI
CPPAYYADLVCDRARCYLSDLFSPTASTSPGASVAGDTAVGDGADRRLVEIHGNVRDRWI
CALPIELAAGQEMLDEEDDDPLEYDAESDLYTFGRIGEHNVILACLPAGQTGTNSAAAVA
TRIASTFTSLRFSLMVGIGGGVPSVISDVRLGDVVISQPFMQHGGVVQYDFGKIGTNGHS
MRTGALNAPPAILLKAVSKLRALHYRGRSNLAAYLSTFDRLEAFSRDAAGADILYEAAYN
HVGGPTCQQCSQEKEVKRLQRMQGPVIHCGTIASGNRVIQDGITRDRISEELGGVLCYEM
ESAGLMNAFPCLVIRGICDYADSHKHKKWQPYAAATAAACAKEILSLVPAKASTTNTGPS
SEEYARQLCQIKFPSEEVVKLQQGIKTLQEQSKSLHQQYDTSMTVGQQHLQAQYALLQQL
RSNLVDLKHQALERELPPEIKSNAYVTVFDAENRPLRFVFDTMSSQKIMSAMKRQLKDVE
LDNMRRGEWYIRDRRERASESTELSSSLLRACQCLNISVKFRLPNKSSTLCPVCHLENPG
DSDQQ
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgtctagccatcagactggccgtggtcgtggtagatatacagatcgaggtggaggcgga
ggacgtggacgcggacgcggatgggaagcatctctccaagtacacgacactagcagggca
ccaaggggcaggggccgtggccgtggtgggtcatgggaactccaaatctacagccaaggt
gaccagacggcccaggtagataccaacgtggcgcagaaagaaacaaactacgagaccgct
gccaaaactgtgaacaagaaaaagttagctgctctgggcgctagatatccaccacgtcca
gggtttggtacccaaggcagggccgttgtcttatggacaaaccatctacatctggcattc
gatggaaatctacagctcttccgttacagtattagaatacttccagaacaaggtgaccga
cctccggtgggcaagaaagccaagcgagttatccaactattactagaagaacacttcccc
caatacggccaaagcattgccacggatttcaaagcaatccttatcagcaaacaaaatatt
gaagttgcagaggaatacaacgtattatacagatctgaggatgaggaggaaccggcaccg
aacgcgaagcgttaccgtgttcaactcgactccacgggttcggtcacagtttctgaactc
acggactatctcacatcttccaactttggcgcactgctgtcgtcgaaagaagaaacgctt
caggctctgaacattgttctaggtcatcacagtaaagacgttccgcatattgcttctgtc
ggggcgaatcgccactttgacttgacttccccggataagcagaacctgggggctgggttg
ctagccatccgtgggttcttcgtcagtgtgcgtgcagcgacggctcgtctactagttaat
gttcaggttaagcatggggcattctacgttgattacccgcttgataggttgatgacggaa
tatatggctgtgaatgggccaaatactgctagattggcgaattttgtgaaaagggtttca
gtcaacgtcactcatattgtgaggaggaatagggctggggaacctatcaagcggatcaag
gtgatacgagactttgcgcgggttgacgatggtaggaaccaggagcatccgcctattgtg
ccgcacttcggagctggtcctcgggacgtgaagttcttcgtgacggacacagcgggatcg
acagcaggtccgagtaggactgtacctggtgccggtccttcgacaactgggaagtcgaag
aagaagaaggcggcgaaagggccaactggcccggcagtcccaactgcttcgcagggtcga
tatgttagtgtgtacgaccactttaaaaacacgtatcacataacgatccgagaccctacg
ctgcctgtcatcaatgtgggcagccgtgaaatgccttcatatctacctcctgaagtttgc
gtggtcttgccggggcagcctgcaaacaaacagcttacaccatctcaacttcagcaaatg
atcaagtttgctgtacgccggcccgctcaaaatgcacaatccatcacggcgtctggagtg
cgaacattgggcgtggatcctatcaactctactctagctgcctttggaatccatgtatcg
aggaacttgcttgccgtacccggccgggtgttgaactgcccagccgtcaaatacaaaggc
gataaaactgttgcatcgagattgggcagctggaatatgcagtttgttcaatttgcggtg
ccgaagcagttgtcccgttggacatggctttggatatccctccaaggcatgcgcgatcca
tggcgaaacatcatggagttgaagtcatcgttgggtgcctttcggaatgtgcttcagcgg
ttaggtctagttacggctgaatgccttgacgggattcacatcacggtaaatcaagacaat
gccgattcagaaattgacactgcaatccagcggtttgccaagggtaaaagcataccgccc
cagctgctccttgttatcctaccgtcggatattgcagcaatctacaaacgtgtaaaagca
gattgcgatgtcagagggggtctgttaaacgtgtgcgtggtggctaagaagtttttcaat
gccaacgaacagtactacgccaatgttgccatgaaggtgaacctgaagctcggcgggcag
aaccactacgtggacaaatccaagctcgggatcttatctgaagggaaaaccatggttgtg
ggcatcgacgttacgcacccgtctcctggatcttcgtcgcaagctcccagcgtggctagt
attgcggcctctatagatgggaatctcgcccagtggccagcagacttgagaatacagact
gctcggcaggagatggtagctgggctggatgccatgttccagggacgactacgtctttgg
aggaagcacaatggccgctaccctgacaacattctcgtgtgtagggacggcgtgtcagag
ggacaatacgaccaggttcttgaccaggaactaccagcaatgcgcagcgcctgcaaagag
atatacccagcagacgctacgaagcaaggccttccacatttcacaattgtaatcgtcggg
aaacgccacaatactcgtttctatccgacaagaaccgaagatgcagatcggtctgcaaac
cctcaaaacggaactgtcgtggatcgcggagtaacagaggctcagaactgggactttttt
ctgcaggctcacgctgcaatacagggcactgctcgtcctgcgcactattacaccattcta
gatgagatatttgctgcgcggccggtcaaactgccgttgaggaactcggcggacgttttg
gaggatttgatgcataatatgtgttatctctttggacgggcgaccaaggctgttagcatt
tgtccaccggcttattatgcggatcttgtttgtgatagggcgaggtgctatttgagtgat
ttgtttagtcctacggcttcgacgagtcctggtgcgagtgttgcgggtgatactgctgtt
ggtgatggtgctgataggaggttggttgagattcatgggaatgtgagggataggtggata
tgtgccctcccaatcgaactcgcggctgggcaagaaatgctggacgaggaagatgatgac
cctcttgaatatgatgcagagtctgacctgtacacatttggtcgcatcggcgaacacaat
gtcatcttggcatgcctaccagccggacagacagggacgaattctgccgctgcggttgcc
acacgaatagcatcaaccttcacgtctctccgctttagcctcatggtaggaatcggcgga
ggagttcccagtgtgatatcagacgtacggctgggggacgtggtgatcagtcaacctttc
atgcaacatgggggagttgtgcaatacgactttggcaagattggaaccaacggtcacagc
atgcggaccggagcactcaacgcacctcccgcgatccttttgaaggcagtttcgaagtta
cgagcgcttcactaccggggacgtagcaaccttgctgcctatctatctactttcgaccgt
ttagaagccttcagccgtgatgcggccggcgcggatatattatacgaggcagcatataac
cacgtgggaggaccaacatgccagcaatgtagtcaagagaaggaagtcaaacgccttcag
cgaatgcaaggcccagttattcattgtggtaccatagcttcgggcaaccgagttatacaa
gatggtattactcgggacaggattagcgaagagctaggcggcgtgctgtgctacgaaatg
gaatcggcaggtttaatgaatgcctttccctgccttgtgattcgaggaatatgcgattac
gccgactcacacaagcacaagaaatggcagccatatgctgcggctacagcagccgcttgc
gctaaagagatcctgtcacttgtaccggctaaagcttctacgacaaacactggaccatca
tctgaagaatacgcgaggcaattgtgtcagattaagttcccgtcggaagaagttgtcaaa
ttgcaacaggggattaagacactgcaggaacagagcaaatccctgcatcaacaatatgat
acatctatgacagttggacaacaacatcttcaggcgcagtatgccctcctgcaacagcta
cgttccaatctagtggatcttaaacatcaggcacttgaacgtgaattacctcctgagatc
aagtcgaatgcctatgtgacggtctttgacgccgaaaatcgacccttgcgcttcgttttt
gacacgatgagttctcaaaagataatgagtgctatgaagcgtcaactaaaagatgtcgag
ttggataatatgcggcgaggagagtggtacatccgtgaccgcagggagagagcctctgaa
tccacggaactttcatcatcactcctgagggcttgtcaatgcctaaacatttctgttaag
tttcgcctaccaaataaatcgtcaacactatgtccagtgtgccatttagagaaccctggt
gattctgatcaacagtag
DBGET
integrated database retrieval system
