Paraburkholderia caledonica: CUJ87_07560
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Entry
CUJ87_07560 CDS
T05740
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcj
Paraburkholderia caledonica
Pathway
pcj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CUJ87_07560 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcj03400
]
CUJ87_07560 (ligD)
Enzymes [BR:
pcj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CUJ87_07560 (ligD)
DNA repair and recombination proteins [BR:
pcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CUJ87_07560 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AXF14283
UniProt:
A0A2Z5MB14
LinkDB
All DBs
Position
PHRS4_A:1706761..1709793
Genome browser
AA seq
1010 aa
AA seq
DB search
MNDRLDLYNRKRRFDETPEPAGNKATKKRGGRNAARPGPDEGLSYVIQEHHARRLHYDFR
LELNGALLSWAVPKGPCLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGTVIVWDRGT
WEPVGGAAEAARAYRAGKLKFHLYGEKLHGGWTLVRSHMRGNADKEQWLLIKERDDEARP
ESEYDVLAEQPGSVLAAAPASNGKGGKRTSKQTGKPEDKQVAAKRTAAAPVRGDPKRPDI
VATRSSESLRELAASPAIEGAVAAKLPATLKPQLATLVDATPPGDEWSYEIKFDGYRVLA
RIDASGKGRDVQMFTRAGNDWTAKFGKQVRAFEQLGVESAWLDGEAVVLDENGVPNFQAL
QNAFDSNRPQDIVVYLFDVPFLNGYDLRGVPLQQRRAILRALLEPVDDSVLRFSNDFEFS
ADDLLKSACDMALEGIIGKRRDSGYSSGRSATWIKLKCRRRQEFVIGGYSEPSGSRAAFG
ALLLGVYDSKGKLQYAGRVGTGFDAALLRSVKKELDAHETKRMPFASPPRERSRTPVHWV
EPVLVAECNFAEWTSDGIVRQASFVSLRSDKPARQIVKEAPRKGDDVQQQTDIEAESDSA
QKKRSGRRAAAEADDDVQTSGASKKRSDGKTAGEEARDNDTEKGAKTVGKPGAKTTAKAS
ANSTAKPTAKTAGEATATTPAAKTASKAAAKTTIPKDEAGDTKTAASRSKKSASPAEVAG
VRVSHPERVIDKSTGARKIDLVQYYESVARWMLPHLADRPVSLVRAPEDIGGELFFQKHS
QKLSIPNITQHPGLDPGHPPLITVETVKALVGAAQMGTIEFHTWNGVASNIEKPDRVVFD
LDPDPSLGWDRMIEAAQLTRSLLDELGLMSFCKTSGGKGFHVVVPLSKHAGWDEVKEFSQ
AVAQHMASTLPKYFSAKMGAQNRKQKIFVDYLRNNRGSSTVAAFSARARPGLGVSVPLAW
DEVASTTGGDQWNIGNLHERLANLKSDPWADYSKTRQRITAAMRKRLNGA
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccgactcgacctctacaaccgcaagcgccgcttcgacgaaacgcccgagccc
gccggcaacaaggcgaccaaaaagcgcggcgggcgcaatgcggcgcggcccggaccggac
gagggcctgtcgtacgtgattcaggagcaccacgcgcggcgcctgcactacgacttccgt
ctcgaattgaatggcgcactgctttcgtgggcggtgccgaaagggccgtgcctcgatcca
tcggtcaagcgtctcgccgttcatgttgaagatcatccggtcgagtacggttcgttcgaa
ggcgaaattccgccgggaaattacggcgcgggcacggtgatcgtctgggatcgcggcacg
tgggagccggtcggcggcgcggccgaggcggcgcgtgcttatcgggccggcaagctcaag
ttccatctgtacggcgaaaagctgcacggcggctggacgctcgtgcgcagccacatgcgc
ggcaacgccgacaaggagcaatggctgctgatcaaggaacgcgacgacgaggcgcgtccc
gagagcgaatacgatgttctcgcagaacagccgggcagtgtgctcgccgccgcgccggcc
tccaatgggaaaggcggcaagcggacaagcaagcagacgggcaagccagaagacaagcag
gtggcagcgaagcgaactgcggcggctcccgtccgcggcgatccgaagcgtccggacatc
gtggcgacgcgcagcagcgaatcgctgcgcgaactcgccgcgtcgccggcaatagaaggt
gcggtggcagcaaaactgcctgcgacgctcaagccacagttggcgacgctcgtcgatgct
acgccgcccggggacgagtggtcgtacgaaatcaagttcgacgggtatcgcgtgcttgct
cgcatcgacgcgagcgggaagggccgcgacgtgcagatgttcacgcgcgcaggcaacgac
tggaccgccaaattcggcaagcaggtgagggcattcgagcaacttggcgtggaaagcgcg
tggctcgacggtgaagcggtggtgctcgacgagaacggcgtgcccaactttcaggcgttg
cagaacgcgttcgattcgaaccggccgcaagacatcgtcgtctatctgttcgacgtgccg
tttctgaacggctacgacttgcgcggcgtgccgctgcagcaaagacgcgcgatcctgcgc
gcgctgctcgaaccggtcgacgacagcgtgctgcgcttttcgaacgacttcgagttcagc
gccgacgatctgctgaaaagcgcgtgcgatatggcgctcgaagggatcatcggtaagcgg
cgcgacagcggctatagctccggccgctcggccacctggatcaagctcaagtgccgccga
cgccaggagttcgtgatcggcggttattcggaaccgtcgggtagccgcgcggcgttcggc
gcactgcttctcggcgtgtacgacagcaagggcaagttgcaatatgcggggcgcgtcggc
accggtttcgacgccgccttgctgcgctcggtgaagaaagaactcgacgcacacgaaacg
aaacgcatgccgttcgcgagtccgccgcgcgagcgcagtcgcacgccggtgcattgggtc
gaacccgtgctcgtcgcggaatgcaatttcgccgaatggacgagcgacggtatcgtgcgc
caggcgtcgttcgtcagtttgcgcagcgacaagccggcgcgccagatcgtcaaggaagca
ccacgcaagggggacgacgtgcaacaacaaacggatatcgaggccgaatccgactcggcg
cagaagaaacgttcaggacggcgcgcggcggctgaagcggatgacgatgtgcagacttca
ggcgcaagtaagaagcgctccgacggcaaaacggcgggggaagaagcaagggacaacgac
acggaaaagggcgcgaaaacggtagggaagccgggtgctaaaaccaccgcaaaggcgtcg
gctaattcgaccgctaaaccgaccgctaaaaccgctggcgaagcaacggcaaccacgccg
gccgcgaagacagcgagcaaagcagcagccaaaaccaccatacccaaagacgaagccggg
gacactaaaaccgccgcgtcgcgatcaaaaaaatccgcgtcacccgccgaagtcgccggc
gttcgcgtgtcgcacccggagcgcgtgatcgacaagagcaccggcgcgcgcaagatcgac
ctcgtgcagtactacgaatcggtcgcgcgatggatgttgccgcatctggcggaccggccc
gtgtcgctcgtgcgcgcacccgaggacatcggcggtgagctgtttttccagaagcacagc
cagaagctgtcgatcccgaacatcacgcagcaccccgggctcgaccccggtcaccctccg
ctcatcacggtggagaccgtgaaggcgctagtcggcgccgcgcaaatgggcaccatcgaa
tttcacacgtggaatggcgtggcatcgaacatcgaaaagccggaccgcgtggtgttcgac
ctggatccggatccgtcgctcggctgggaccggatgatcgaggcggctcaactgacgcgc
tcgctgctggacgaactcggcctcatgtctttttgcaagacaagcggcggcaagggcttc
catgtcgtggtgccgctgtcgaaacacgcgggttgggacgaggtgaaggagttttcgcag
gcggtcgctcagcacatggctagcacgctgcccaaatatttcagcgcgaaaatgggcgcg
caaaatcgcaagcagaagattttcgtcgactatttgcgcaataaccgcggctcgagcacg
gtcgctgcgttttccgcgcgggcgcggccggggctaggcgtttcggtgccgctcgcgtgg
gacgaagtcgcgtcgaccactggcggcgatcagtggaatatcgggaacctgcatgagcgt
cttgcaaatctgaagagcgacccgtgggccgactactcgaagactcgccagcgcatcacc
gcggcaatgagaaaacgcctgaacggagcgtag
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