KEGG   Paraburkholderia caledonica: CUJ87_07560
Entry
CUJ87_07560       CDS       T05740                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pcj  Paraburkholderia caledonica
Pathway
pcj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pcj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CUJ87_07560 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pcj03400]
    CUJ87_07560 (ligD)
Enzymes [BR:pcj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CUJ87_07560 (ligD)
DNA repair and recombination proteins [BR:pcj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CUJ87_07560 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AXF14283
UniProt: A0A2Z5MB14
LinkDB
Position
PHRS4_A:1706761..1709793
AA seq 1010 aa
MNDRLDLYNRKRRFDETPEPAGNKATKKRGGRNAARPGPDEGLSYVIQEHHARRLHYDFR
LELNGALLSWAVPKGPCLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGTVIVWDRGT
WEPVGGAAEAARAYRAGKLKFHLYGEKLHGGWTLVRSHMRGNADKEQWLLIKERDDEARP
ESEYDVLAEQPGSVLAAAPASNGKGGKRTSKQTGKPEDKQVAAKRTAAAPVRGDPKRPDI
VATRSSESLRELAASPAIEGAVAAKLPATLKPQLATLVDATPPGDEWSYEIKFDGYRVLA
RIDASGKGRDVQMFTRAGNDWTAKFGKQVRAFEQLGVESAWLDGEAVVLDENGVPNFQAL
QNAFDSNRPQDIVVYLFDVPFLNGYDLRGVPLQQRRAILRALLEPVDDSVLRFSNDFEFS
ADDLLKSACDMALEGIIGKRRDSGYSSGRSATWIKLKCRRRQEFVIGGYSEPSGSRAAFG
ALLLGVYDSKGKLQYAGRVGTGFDAALLRSVKKELDAHETKRMPFASPPRERSRTPVHWV
EPVLVAECNFAEWTSDGIVRQASFVSLRSDKPARQIVKEAPRKGDDVQQQTDIEAESDSA
QKKRSGRRAAAEADDDVQTSGASKKRSDGKTAGEEARDNDTEKGAKTVGKPGAKTTAKAS
ANSTAKPTAKTAGEATATTPAAKTASKAAAKTTIPKDEAGDTKTAASRSKKSASPAEVAG
VRVSHPERVIDKSTGARKIDLVQYYESVARWMLPHLADRPVSLVRAPEDIGGELFFQKHS
QKLSIPNITQHPGLDPGHPPLITVETVKALVGAAQMGTIEFHTWNGVASNIEKPDRVVFD
LDPDPSLGWDRMIEAAQLTRSLLDELGLMSFCKTSGGKGFHVVVPLSKHAGWDEVKEFSQ
AVAQHMASTLPKYFSAKMGAQNRKQKIFVDYLRNNRGSSTVAAFSARARPGLGVSVPLAW
DEVASTTGGDQWNIGNLHERLANLKSDPWADYSKTRQRITAAMRKRLNGA
NT seq 3033 nt   +upstreamnt  +downstreamnt
atgaacgaccgactcgacctctacaaccgcaagcgccgcttcgacgaaacgcccgagccc
gccggcaacaaggcgaccaaaaagcgcggcgggcgcaatgcggcgcggcccggaccggac
gagggcctgtcgtacgtgattcaggagcaccacgcgcggcgcctgcactacgacttccgt
ctcgaattgaatggcgcactgctttcgtgggcggtgccgaaagggccgtgcctcgatcca
tcggtcaagcgtctcgccgttcatgttgaagatcatccggtcgagtacggttcgttcgaa
ggcgaaattccgccgggaaattacggcgcgggcacggtgatcgtctgggatcgcggcacg
tgggagccggtcggcggcgcggccgaggcggcgcgtgcttatcgggccggcaagctcaag
ttccatctgtacggcgaaaagctgcacggcggctggacgctcgtgcgcagccacatgcgc
ggcaacgccgacaaggagcaatggctgctgatcaaggaacgcgacgacgaggcgcgtccc
gagagcgaatacgatgttctcgcagaacagccgggcagtgtgctcgccgccgcgccggcc
tccaatgggaaaggcggcaagcggacaagcaagcagacgggcaagccagaagacaagcag
gtggcagcgaagcgaactgcggcggctcccgtccgcggcgatccgaagcgtccggacatc
gtggcgacgcgcagcagcgaatcgctgcgcgaactcgccgcgtcgccggcaatagaaggt
gcggtggcagcaaaactgcctgcgacgctcaagccacagttggcgacgctcgtcgatgct
acgccgcccggggacgagtggtcgtacgaaatcaagttcgacgggtatcgcgtgcttgct
cgcatcgacgcgagcgggaagggccgcgacgtgcagatgttcacgcgcgcaggcaacgac
tggaccgccaaattcggcaagcaggtgagggcattcgagcaacttggcgtggaaagcgcg
tggctcgacggtgaagcggtggtgctcgacgagaacggcgtgcccaactttcaggcgttg
cagaacgcgttcgattcgaaccggccgcaagacatcgtcgtctatctgttcgacgtgccg
tttctgaacggctacgacttgcgcggcgtgccgctgcagcaaagacgcgcgatcctgcgc
gcgctgctcgaaccggtcgacgacagcgtgctgcgcttttcgaacgacttcgagttcagc
gccgacgatctgctgaaaagcgcgtgcgatatggcgctcgaagggatcatcggtaagcgg
cgcgacagcggctatagctccggccgctcggccacctggatcaagctcaagtgccgccga
cgccaggagttcgtgatcggcggttattcggaaccgtcgggtagccgcgcggcgttcggc
gcactgcttctcggcgtgtacgacagcaagggcaagttgcaatatgcggggcgcgtcggc
accggtttcgacgccgccttgctgcgctcggtgaagaaagaactcgacgcacacgaaacg
aaacgcatgccgttcgcgagtccgccgcgcgagcgcagtcgcacgccggtgcattgggtc
gaacccgtgctcgtcgcggaatgcaatttcgccgaatggacgagcgacggtatcgtgcgc
caggcgtcgttcgtcagtttgcgcagcgacaagccggcgcgccagatcgtcaaggaagca
ccacgcaagggggacgacgtgcaacaacaaacggatatcgaggccgaatccgactcggcg
cagaagaaacgttcaggacggcgcgcggcggctgaagcggatgacgatgtgcagacttca
ggcgcaagtaagaagcgctccgacggcaaaacggcgggggaagaagcaagggacaacgac
acggaaaagggcgcgaaaacggtagggaagccgggtgctaaaaccaccgcaaaggcgtcg
gctaattcgaccgctaaaccgaccgctaaaaccgctggcgaagcaacggcaaccacgccg
gccgcgaagacagcgagcaaagcagcagccaaaaccaccatacccaaagacgaagccggg
gacactaaaaccgccgcgtcgcgatcaaaaaaatccgcgtcacccgccgaagtcgccggc
gttcgcgtgtcgcacccggagcgcgtgatcgacaagagcaccggcgcgcgcaagatcgac
ctcgtgcagtactacgaatcggtcgcgcgatggatgttgccgcatctggcggaccggccc
gtgtcgctcgtgcgcgcacccgaggacatcggcggtgagctgtttttccagaagcacagc
cagaagctgtcgatcccgaacatcacgcagcaccccgggctcgaccccggtcaccctccg
ctcatcacggtggagaccgtgaaggcgctagtcggcgccgcgcaaatgggcaccatcgaa
tttcacacgtggaatggcgtggcatcgaacatcgaaaagccggaccgcgtggtgttcgac
ctggatccggatccgtcgctcggctgggaccggatgatcgaggcggctcaactgacgcgc
tcgctgctggacgaactcggcctcatgtctttttgcaagacaagcggcggcaagggcttc
catgtcgtggtgccgctgtcgaaacacgcgggttgggacgaggtgaaggagttttcgcag
gcggtcgctcagcacatggctagcacgctgcccaaatatttcagcgcgaaaatgggcgcg
caaaatcgcaagcagaagattttcgtcgactatttgcgcaataaccgcggctcgagcacg
gtcgctgcgttttccgcgcgggcgcggccggggctaggcgtttcggtgccgctcgcgtgg
gacgaagtcgcgtcgaccactggcggcgatcagtggaatatcgggaacctgcatgagcgt
cttgcaaatctgaagagcgacccgtgggccgactactcgaagactcgccagcgcatcacc
gcggcaatgagaaaacgcctgaacggagcgtag

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