Pedobacter cryoconitis: AY601_3223
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Entry
AY601_3223 CDS
T04341
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AY601_3223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_3223
Enzymes [BR:
pcm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AY601_3223
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AY601_3223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AMQ00094
UniProt:
A0A127VFJ5
LinkDB
All DBs
Position
complement(3835569..3838217)
Genome browser
AA seq
882 aa
AA seq
DB search
MSLTAYKKKRSFAQTPEPKGGKGSGKELRFVIQKHDASHLHYDFRLEMGGVLKSWAVPKG
PSTDPEVKRLAMMVEDHPYDYKDFEGLIPKGEYGGGTVIVWDEGTYEPDEPVDGTIEDQD
RNLRHQLHSGKISFTLHGKKLKGSFALVRTHGMGENSWLLIKHKDKYAKSDDILLKDKSV
ISKKTIEQMAKKPVQVYGKKTIKPKQPDAVKPEAEAVKSKLAEAVKPKQNKIVKTPFYDQ
VKPMLATLVDEAFDKEGWLYEVKWDGYRAVALMNKGSVEFKSRNNKSFQEKFYPIYQALL
EWNVNAIVDGEVVSVDKKGKASFGDLQNWHSDQNGELLYYVFDILWYDGHDLTVLSLMQR
KAILAQLIPENSPVRLSKGFETSGIEFLAAAKKAGLEGIMAKRKDSLYVAGERTNDWLKI
KASKRQEVVIGGYTKNAGTSKPFSSLLVGLFEGGKFIYTGKIGTGFSMEMQQELLARFEP
LLIAEPAFTEKPAYNKANPFRAGLGKAKAFWLKPEMICEVNFAEMTTDGVMRHPSFAGMR
EDKDAKEVVLEKEADTSAILAGTDDDLTKLNGMKQLLNPKEETQVKKVNGHSLEFTNLNK
IFWPVEQFTKRDLINYYEQMSSFILPYMKDRPLSLNRYPNGITGESFYQKDVTGKVPDWV
KTYLYHAEGDDSDKHFMLGEDKATLLYSAGLGCIEVHPWSSTIKKPDYPTWCIIDLDPDK
NSFQQVIEAAQVTKAVLDDMGVPCYCKTSGSTGLHVYIPLGNKYTYEQSKEFARIIVTLV
NREIPAYTSLERAVSKRKGKMYLDFLQNRPQATIAAPYSLRPKPGATVSMPLHWDEVKKG
LEMKDFTISNALSRVKETGDIFKPVLGKGIDLKKIIKGRQLK
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaacagcctataaaaagaaacgatcttttgcgcagactcctgaacctaaaggg
gggaaaggaagtggaaaagaattgcgctttgtcattcagaaacacgatgcttcacatctt
cattatgatttcagactggagatgggtggggtattgaaaagctgggccgttccaaaagga
ccttccacagatccagaagtgaagcggcttgccatgatggttgaggaccatccttacgac
tataaagattttgaaggtcttattcctaaaggggaatatggtggaggaactgttattgtc
tgggatgagggaacttatgagccggacgagcccgtagatgggactattgaagatcaggat
cgaaacctgagacaccagctgcatagtggtaaaattagtttcaccttgcatggcaaaaag
ctgaaaggttcttttgcgctggtcaggacccatggaatgggggagaatagctggctttta
attaagcataaagataaatatgccaaaagtgacgatattttgctgaaggataaatcggta
atctccaaaaagactattgagcaaatggcgaagaaacctgttcaggtttatggaaaaaaa
acgattaaacctaagcagcctgacgccgttaaaccggaggctgaagctgttaaatccaag
ctggctgaagctgttaaacctaaacagaataaaatcgtgaaaacccctttttacgatcag
gtaaaacctatgctggctaccttggtagatgaggcatttgacaaagagggctggttgtat
gaagtgaaatgggatggttaccgggcggtggctttaatgaataaaggaagcgtagaattc
aagtccaggaacaataaatctttccaggaaaagttttacccgatttatcaggcgctacta
gaatggaatgtcaatgcaattgtagatggtgaggtcgtttccgttgacaaaaaaggaaag
gctagtttcggggatttacagaactggcacagcgatcaaaatggagagttgctatattat
gtttttgatattttatggtatgatgggcatgatcttaccgttttatctttgatgcaaaga
aaggctatacttgctcagctgattcctgaaaattctcctgtgaggcttagtaagggtttc
gaaacctcaggcatagaatttctggctgctgcaaaaaaggctggactggaaggtattatg
gccaaaagaaaagatagtttatatgttgctggcgagcgcaccaatgattggcttaaaatc
aaagcaagtaagcgtcaggaagtagttattggcggatatacgaagaatgcaggcacgagt
aaaccttttagttcattattggttggcttgtttgaaggtggtaaatttatttatacggga
aaaattggtacaggatttagtatggaaatgcagcaagaattgttggctcgttttgaacca
ttgcttattgctgaaccagcattcactgagaaaccagcttataataaagccaatccattc
agagctggtttgggtaaggcgaaggcattctggctgaaaccagaaatgatctgtgaagtt
aattttgcggaaatgactactgatggtgtaatgcggcacccatcttttgcaggaatgcgg
gaagataaagacgctaaagaagttgtccttgaaaaagaagcagatacatcagctattttg
gctggtactgatgatgatttaactaagctgaacggaatgaaacaattgctgaatccaaaa
gaagaaacccaggtaaaaaaagtaaacggacattccctggaatttaccaatttgaataag
atattctggccagttgaacaattcaccaaacgtgacctgattaattattatgagcagatg
tcatcctttatattgccgtatatgaaagaccggcctttgtccttaaaccgttatccaaac
ggaattaccggagaaagtttctatcagaaagatgtgactggaaaagtccctgattgggtt
aaaacttacctttatcatgctgagggggatgattcagataagcattttatgctaggggaa
gataaagccacgttattgtactccgcaggccttggctgtattgaagttcatccctggagc
agtaccattaaaaaacccgattatccgacctggtgtattattgaccttgatccggataag
aattctttccagcaggtaatcgaagcagcacaggtaaccaaggctgtgctggatgatatg
ggtgtaccctgctattgtaaaaccagtggctctaccgggctgcatgtctatattccttta
ggcaacaaatacacttatgagcagagtaaggagtttgcgaggatcattgttacgctggtt
aaccgggagatacctgcatatacaagtctggagcgtgctgtttccaaacggaaggggaaa
atgtaccttgactttttgcagaaccgtcctcaggccactattgctgctccatattctctg
cgccctaaacctggcgctacggtttctatgccattacattgggacgaagtgaaaaagggg
ttggaaatgaaagactttacaatttccaatgctttatccagagtcaaagaaacgggtgat
atttttaaaccagtattagggaaaggaattgatcttaagaaaattattaaaggcaggcaa
ttgaaataa
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