Pectobacterium colocasium: PJ912_20465
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Entry
PJ912_20465 CDS
T08961
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcoa
Pectobacterium colocasium
Pathway
pcoa02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcoa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PJ912_20465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcoa03021
]
PJ912_20465
Transcription machinery [BR:
pcoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PJ912_20465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
HTH_11
HTH_28
HTH_24
Phage_terminase
TnsD
HTH_Tnp_4
Motif
Other DBs
NCBI-ProteinID:
WED68267
LinkDB
All DBs
Position
complement(3951639..3952160)
Genome browser
AA seq
173 aa
AA seq
DB search
MYTEAAKKPDLLSLIFRSDYRWLTEKLRRRIAYGCEAEDVASEAFLRLASLPNLANVQEP
RAMLTTLAKRVLYENWRRRDLEKAYLTALASKPEFHHPSPEEQQLLMEALLTIDQALDGL
SIKARQAFLFSQLDGMTYADIAVQLDVSVSMVRKYIAKALTNCYLATQDSSDL
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgtacacagaggctgctaaaaaacccgatttgctgtcgttgatatttcgcagcgattat
cgctggctaacggaaaaattacgccgccgcattgcctatggctgtgaagcggaagatgtc
gcttccgaggcctttctgcgtttagcctcgctgccgaatctcgccaacgtacaagaaccg
cgcgcgatgttaacgacgctcgccaagcgcgtgctgtatgaaaactggcgtcggcgcgat
ctggaaaaagcctacctcaccgcgctggcgagcaaaccggagtttcaccatccgtcaccg
gaagagcaacaactgttgatggaggcgctgcttaccatcgatcaggcgctggatggtctc
tccatcaaagcacgacaggcctttctgttcagccagcttgatggcatgacctatgcggac
attgccgtacagctcgatgtgtccgtcagtatggtcagaaaatatatcgccaaagcgttg
accaattgctatttggccacgcaggacagcagtgatttatag
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