Phasianus colchicus (Ring-necked pheasant): 116234425
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Entry
116234425 CDS
T07365
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116234425 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcoc00536
]
116234425 (COL27A1)
Glycosaminoglycan binding proteins [BR:
pcoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116234425 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116234425
NCBI-ProteinID:
XP_031457909
LinkDB
All DBs
Position
Unknown
AA seq
1765 aa
AA seq
DB search
MRCGALALALLCALPLGAAGLELPETGSGLQADEVNLLDKMTSHLKDLSNVSFSYDEANC
STLQIGQYSTLSIPTQEVFGDRFADELSVLMKLRYSLQEDTSLLTILSHRSHVLFQIRVS
PYGLVFVTTRRRHYEFPVSLLSDGRWHRVALSISQESLELHVDCRLVERASWPGYLGMGV
GTEGLLVIGGLVESFEIPFEGALQQLTFVMGDAAAAGEHCHSHAVTCVRSSGLGPPPRDH
SAAWPEDSKLSHPDLTLGPPWTWEDAQETLSLQPDGSTRTLFSAAEVPTAEDLEEEEGSL
SIEDEGFELLNSTYNKITGPGRPGISRSRPQIIGIPRSSAKKEQASDPGQENITKEKLKG
NADTRLRLPPIKPGHATNPIASSNVFPSRKQAAAPKGSSGKAAGDPEHPPTPLRHPILPS
VRGYWAHVKPGPPGLPGPPGLPGCPGRRGLVGPKGDKGHAGAMGRMGPPGDPGPTGIPGI
PTVVLWRNSREDWLSFTQSSFYQLLHAGWPRKPGAPGPPGHPGKAGIPGLCGEPGQPGEK
GQRGYMGKPGLQGWPGRAGQPGLDGSPGLGGKPGLCGLPGEQGLQGFRGDRGLAGEKGEE
GFLGDPGPAGEKGEKGMKGVKGESGLPGPAGTHGMAGLKGAMGFQGPAGPEGEGGSVGAS
GPAGPMGQPGQPGSVGCQGVNGSQGEMGPPGLPGPHGPKGPQGLQGQRGPPGLGGMQGPA
GMEGSSGPKGDTGTEGVPGIRGQPGQEGPVGFIGLPGSKGIQGERGCRGPSGAKGDLGAK
GGKGLSGAPGAAGPPGLRGQMGSLGFPGPRGAAGPRGPEGEEGQMGPVGLNSSEGPKGGR
GPDGPKGMPGPRGARGRGGQRGLVGVPGPPGSRGIPGAEGTEGKPGIQGPPGAVGSPGRM
GAPGFVGVQGGRGHAGPPGHTGPQGKPGTDGDLGCMGPKGLPGKPGLEGPQGPVGMYGYP
GLAGDRGKPGHRGDKGEAGAQGPPGFPGKAGPKAPPGPPGPRGAPGSQGRAGEPGPRGFP
GLPGAPGVRGLHGMPGKPGLAGEMGAPGAAGAAGPPGYPGREGPRGPEGPSGMRGEQGVL
GYPGEAGVSGLDGEQGPPGPVGAEGQPGLKGQQGDAGPRGAPGVSGACGERGERGPVGLP
GGPGQQGKEGDVGDAGEVGEPGPQGRKQGDAGPQGPPGVPGLGAALGEAGEKGRKGEKGQ
EGLLGQVGVSGAIGPAGARGRSGGIGLQGPPGLHGLEGAKGDAGPCGRDGAAGAAGLEGP
AGDDGAKGDPGHPGPVGSVGARGRPGSPGFKGYTGHRGAGGAAGTRGQPGRQGPLGPPGN
AGVPGSGGIEGLVGAKGEPGTVGEPGHTGSPGQAGPQGQKGHKGEKGDVGQEGPEGAPGE
AGRRGKRGKVGHRAPRGSRGPKGHQGDEGLAGPQGLQGLYGIPGLKGFRGDPGHKGLKGE
KGSRGHLGQHGDDGFKGNHGPQGTPGQPGPKGEQGDAGPPGPRGLPGLPGKPGLPGQKGL
KGFLGHPGARGKPGPPGLAGPPGPSGPVLVLSEKELWHLIYPADRLNRTTVLALLDNLSR
ELRALVEHPDGTKDKPAATCKELLLAHPNLPDGHYYIDPNQGSPRDAFMAFCNFTAGAET
CIPPVRNQVPIKAWLSSYASMHTFEWFSALPGGFVLEYTGASAVQLRFLRLHSHRAAQKI
SYSCRPASHHRQPQKEIRFLADTREQSYVATLQGCLPDNDSSITDTIFHFTTEELALLPL
RDLAVFHDGDALHQFGFTIGPVCFS
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgcggggcgctggctctggcgctgctctgcgcgctgcccctgggagcggcgggg
ctggagcttcccgagacgggctcagggctgcaggcagatgaagtgaacctgctggacaaa
atgacttctcacttaaaggacctcagcaatgtttccttcagctacgacgaggccaactgc
agcactctgcagattgggcagtactccaccctcagcattcctacacaggaggtgtttggg
gacaggtttgcagatgagctgagtgtgctgatgaagctcaggtactcactgcaggaggac
accagcctgttgactatcctgagccatcggagccacgtgctcttccagatccgggttagc
ccatatggcttggtctttgtcaccacgaggaggaggcactatgagttccccgtttccctg
ctcagtgatgggcgctggcaccgagttgctctcagcatctcccaggagagcctggagctg
cacgtggactgtcggctggtggagagagccagctggcccggctacctggggatgggtgtg
ggcaccgaggggctgctcgtcatcggaggtctggtggagtcctttgagatcccctttgag
ggagctctgcagcagctgacctttgtgatgggggatgcagcagcagctggcgagcattgt
cacagccatgctgtgacatgtgtgcgctcctctggcctcggtcctccgccgagggaccac
tctgcagcatggccagaggattccaagctctcccatccagatttgaccttgggcccacct
tggacatgggaggatgcccaggagacccttagcctgcagccagatgggagcacccggact
ttgttctcagctgccgaggtgccaacagctgaagatctggaggaagaagagggaagcctt
tctattgaggatgaaggctttgagctgttgaactccacttacaataaaattaccggccct
ggcaggccagggatcagcaggagcagaccacagatcattggcatccccagatcatcagcc
aagaaggagcaagcctctgaccctgggcaggagaacatcaccaaggagaagctgaagggc
aatgcagacacccgccttcgcctcccacccatcaagcctggccatgccaccaaccccatt
gcctcctccaacgtattcccatcgagaaaacaggcagctgcacccaagggttcctcaggg
aaggctgcaggggatccagagcatcctcccacccccctgaggcaccccatcttaccatca
gtgcgtggatattgggctcatgtgaagccaggacccccagggctgccgggacccccaggg
ctgccgggatgccctgggagacgtggactggtggggcccaaaggagacaaaggtcacgcc
ggagccatggggaggatgggacccccaggggacccaggacccacaggcatccctggcatc
cccactgttgtcctctggaggaactcccgcgaggactggctgagcttcacgcaatcatcc
ttttaccagctgctgcacgctggctggccgagaaaacccggagcccccggccccccaggg
cacccagggaaagcaggcataccggggctgtgtggggagccgggacagccaggggagaag
ggccagcgggggtacatgggcaagccagggctgcagggctggccgggtcgtgcagggcag
cctggcttggatgggtcccctggcttggggggcaaacctgggctgtgtgggctgcctggc
gagcaggggctgcagggcttccgtggggaccgggggctggctggtgagaagggagaagag
ggcttcttgggtgaccctggacctgctggggagaaaggcgagaaaggaatgaagggggtg
aaaggagagagtgggctgcccggtcctgctggaactcacggcatggcaggtctgaagggt
gcaatgggcttccagggccctgcagggccagagggagaaggtggttcagtgggtgcctca
ggccctgctggccctatggggcagccaggccagccaggctctgttggatgccaaggagtc
aatggctctcagggagagatgggtcctcctggcttgcctggcccccatggtcccaagggg
ccgcagggcttgcaggggcagcgtggcccccccggcctcgggggtatgcagggtcctgct
gggatggaggggtcctctggtcccaaaggagacactggcacagagggggtccctggaata
aggggacaaccaggacaggagggacctgtggggtttattggcctgccagggtccaagggc
atccaaggagagcggggctgccggggtcccagtggagccaaaggagacctgggagccaaa
ggaggcaagggtctgagtggagcaccaggagctgcgggtcccccagggctgaggggtcag
atgggttcattgggcttcccaggaccccgcggggcagcaggaccacgaggacctgaggga
gaagaagggcagatgggtccagtggggctgaacagcagtgaaggaccgaagggaggccga
ggacctgacggcccaaagggaatgccaggaccacggggtgccaggggtcgtgggggccag
cgtgggctggttggagtcccaggacctcctggctcaagaggcatccctggagcagaaggc
acagaaggaaagcctggtatacagggtccccccggggctgtgggcagccctggcaggatg
ggagcaccgggctttgttggtgtgcaggggggcagagggcacgcaggacctcctggacac
acagggccccaaggaaaacctggaactgatggagacctgggttgcatgggtccaaagggt
ctgcctgggaaacctggcttggagggaccgcagggaccggttggcatgtatggctaccca
ggactggctggcgaccgtgggaagccagggcacaggggagacaagggagaagctggagcc
caaggcccaccaggattccctggaaaagctggtcccaaggccccaccaggcccccccggc
ccacgaggtgctcctggctctcagggaagagcaggagagccgggtcctcgggggttccca
gggctgccgggagctcctggtgtgcgggggctgcacggcatgcctgggaagcctggctta
gcgggggaaatgggggcacctggagcagcaggggctgccggccctcctgggtacccgggc
cgagaaggtccaagaggacctgaggggccttcagggatgcgaggcgagcagggtgtcctg
gggtatcctggggaagctggtgtcagtgggttggatggtgagcagggaccgccaggaccc
gtgggagctgaggggcagccggggctcaaaggccagcagggtgatgcaggacctcgtgga
gctccgggtgtcagcggtgcttgcggggagcgaggagaacgtgggccagtggggctgcca
gggggacctgggcagcaggggaaggagggggatgttggtgatgctggagaggtgggtgag
ccaggaccacagggacgaaagcagggagatgctggcccccagggccctcctggagtaccg
ggactgggagctgcactgggggaggctggagagaaaggccgcaaaggagagaagggccag
gaggggctgctgggccaggttggtgtcagtggtgccataggacccgccggagcccgggga
cgttctggtgggataggtctgcaaggccctcctgggctccatggtcttgaaggagcgaag
ggtgatgcaggaccctgcggcagggatggagctgctggagcagctgggctggagggaccc
gcaggagacgatggagcaaagggagaccctggccatcctggccctgtgggctcagtgggt
gcacgtggacggccaggcagccctggcttcaagggctacactgggcatcgaggagctggg
ggagcagcaggcacacgggggcagccgggtcgacagggtcctcttgggccgccgggcaat
gctggagtcccagggtctggtggcattgagggcctcgtgggtgccaaaggggagccaggc
acagtgggagaaccagggcacacgggctctccaggacaagctggtccccaagggcagaaa
ggtcacaaaggagaaaagggtgatgtggggcaggaagggccagaaggggctcctggagaa
gctggcagacggggcaagcgaggcaaggtggggcaccgggcacccaggggctcccgtgga
cccaagggccatcaaggtgacgaggggctggcagggccccagggcctacaaggactatat
ggcatccctgggctgaagggcttcagaggggaccctggacacaaaggactcaagggcgag
aagggcagcagaggccacctggggcagcacggggacgatggcttcaagggcaaccacgga
ccccagggcactcctgggcaaccagggcccaagggagagcagggtgatgctggccccccc
ggcccacgaggactgcctgggctccctgggaagccgggcttgccaggacagaagggactg
aaaggtttcctgggccacccaggtgccaggggcaagccaggaccaccggggctggccggt
cctcccggacccagcgggccagtgctggtgctatctgagaaggagctgtggcacctgatt
tatcctgccgaccgcctgaaccgtaccacagtgctggctctgctggacaacctgagccgt
gagctgagagcactcgttgaacaccccgatggcaccaaggacaaacctgcagccacctgc
aaggaactgctgctggctcaccccaacctgcctgatgggcattactacatcgaccccaac
cagggcagccctcgggatgctttcatggccttctgtaacttcacggcaggtgctgagacc
tgcataccccccgtgcgcaaccaggtccccatcaaagcctggctgagctcctatgcctcc
atgcacacctttgagtggtttagtgctctgcctgggggctttgtgctggagtacacaggg
gccagcgcggtgcagctgcgcttcctgcgcctgcacagccatagggctgcacagaagatc
tcctactcctgccgccccgcttcccaccaccgtcagccccagaaggaaatccgcttcctg
gctgacacccgggagcagagctacgtggccacactgcagggctgcctgcctgacaacgac
tcctccatcactgacaccatcttccacttcaccacggaggagctggccctgctgccccta
cgggacctggctgtgttccacgatggtgatgccttgcaccagtttgggttcaccattggc
cctgtctgcttcagctga
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integrated database retrieval system
