Candidatus Protochlamydia amoebophila: PC_RS08790
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Entry
PC_RS08790 CDS
T00172
Name
(GenBank) unnamed protein product
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcu
Candidatus Protochlamydia amoebophila
Brite
KEGG Orthology (KO) [BR:
pcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PC_RS08790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcu03400
]
PC_RS08790
Enzymes [BR:
pcu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PC_RS08790
DNA repair and recombination proteins [BR:
pcu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PC_RS08790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
CAF24557
UniProt:
Q6MA42
LinkDB
All DBs
Position
2213681..2216167
Genome browser
AA seq
828 aa
AA seq
DB search
MELKKYLSKRNFNETTEPHEKTKEHSSQSLLFVVQMHNASHLHYDFRLELDGVLKSWAIP
KGPSLNPNDKRLAIQVEDHPYSYHNFEGTIPKGNYGAGEVIVWDKGNYSALGAKSQKESE
QFIRQGLKKGHLKFVLNGHKLKGEFSLIRFQGDDKQWLLIKKSDVYASQVSILEKNESVL
SQRIISLDPKKTGKNPKKTRNSILIQKEIQKTTMPQIIKPMLATLVDKPFDHPDWLFEIK
WDGYRALAQIHNQSVFLWSRNHLSFNSRFDPIVKALNEMTVDAYLDGEIVVLNENGQPSF
QLVQNYLKNQEGFLVYYVFDLLYLKNNDLRELTLLQRKELLKQILPKNSRIRFCEHLIQE
GKAFFKVASQAGFEGIVAKRIDSTYQSTRSKKWLKIKTHQRQEAIICGFTTPRGSREHFG
SLLLGVYKDNELLYVGHTGSGFDQKSLTYVRDLLKPQETCPFSFPPKLHQPTTWVKPELV
CEIQFAEWTKEKIMRQAIFIDLREDKKKQEVVLEEEVKVKKILQETSPISKQQKIKPSIH
TELSFTHLDKIYWPQEGYTKGDLLEYYRSISPLILPYLKDRPETLHRYPNGIGQPGFYQK
DLLHAPNWVQIETISHEEREVHYIIINDEQSLLYVINLGCIELNPFNVRRQSLHYPDYLI
LDLDPEGISFDYVIEVAQGIHHILDPLDIPHVCKTSGATGLHIYIPMGTRYTFEETTQFG
KLIAHLAHEKMPDLTSLERNPKNRQNKVYLDYLQNNFGQTVVAPYSVRPKPEAPISTPLS
WKEVKVGLRPTDFTIKNCLKRFQKVGDLFKPILGKGINLEKILKQLDD
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaaaaagtaccttagtaaaagaaattttaacgagacaactgaaccacacgaa
aagactaaagaacattcctctcaaagccttttgttcgtcgtgcaaatgcacaacgcctct
catttacattatgacttccgattagaattagacggggttcttaaaagttgggctattcct
aaagggccctctctcaatcccaatgataaacgtttagccattcaagttgaagatcatcct
tattcttatcataattttgagggaactattccaaaaggaaattatggagcaggagaagtt
atcgtttgggataaaggtaattattcagctctaggagcaaagtcccaaaaagagtccgaa
caattcataagacaaggtttaaaaaaaggacatttaaaatttgttttaaatgggcacaaa
cttaaaggcgaattttctcttattcgatttcaaggcgatgacaagcaatggttactcatt
aagaaaagtgatgtgtatgcttctcaagtatccattctcgaaaaaaatgaatctgttttg
tctcaacgaatcatttctctagatccaaaaaaaactggtaaaaatcccaaaaaaacgcgt
aattcgatccttattcaaaaagaaatccaaaaaacgaccatgccacaaataatcaaaccc
atgcttgccactttggtcgataaaccttttgaccatcccgactggctatttgaaattaag
tgggatggatacagggcgctagctcaaattcacaaccaatccgtttttttatggtctcgt
aaccatctttcatttaactcacgatttgatccgattgtaaaagccttaaatgaaatgaca
gtcgatgcttatttagatggagaaattgtcgttttaaatgaaaatggacaaccgagcttt
caactcgttcaaaattacctaaaaaatcaagaaggatttttagtttactacgtgttcgat
cttctctacctaaaaaataacgatttacgagaattaacccttttacagcggaaagagctg
ctcaaacaaattctaccaaaaaattcccgcattcgtttttgtgaacatttgattcaagaa
ggaaaagccttttttaaagtggcttctcaagctggatttgaaggaattgtagctaaaaga
attgatagcacctaccaatccacgcgcagtaaaaaatggctaaaaattaaaactcatcaa
agacaagaagcaattatttgtggcttcacaactccgagaggttccagagagcatttcgga
tctctacttttaggagtctacaaagataatgaattgctttatgtgggccatacaggcagt
ggattcgatcaaaaatcgttaacttatgtgcgtgacctcttaaaacctcaagaaacctgc
cctttttcttttcctcccaaactccatcaaccaaccacgtgggtaaaacctgagctagtt
tgcgaaatccaatttgctgaatggacaaaagaaaaaatcatgagacaagcgatttttatt
gatcttcgcgaagataaaaaaaaacaagaagttgtgctagaagaggaagtaaaagtcaaa
aaaattttacaagaaacttctcccatttctaaacaacaaaaaataaaacctagcatccat
acggaattatcttttacgcatttagataaaatttattggccccaagaaggatatacaaaa
ggagatttgcttgagtactatcgatcgatatctcctttaattttgccctatttaaaagat
cggccagaaacgctccatcgttatccaaatggaattggtcagcctggtttttatcaaaaa
gatctccttcatgcacccaattgggttcaaatagaaaccatctctcacgaagaaagagag
gtacactatattatcatcaatgatgagcaaagtttactctatgtaatcaatttaggatgt
attgaattaaatccctttaatgttcgaaggcaatctttgcattatccagattatttaatc
cttgatttggatcctgaaggcatttcatttgattatgtcattgaagtcgctcaaggaatt
caccacatcttggatccgctagacatccctcacgtgtgcaaaacctctggggctaccgga
ctccatatttatattccgatggggactcgttatacttttgaagaaaccacacaatttggc
aaattgatcgctcacttagctcatgaaaaaatgccagatctcacttctttagaaagaaac
cctaaaaatagacaaaacaaagtctaccttgattatttacaaaacaattttgggcaaact
gtcgttgctccttattccgttcgtcccaaacctgaagcccctatctctacccctttgtca
tggaaagaagtgaaagttggtcttcgcccaacagattttactataaaaaattgtttaaaa
agatttcaaaaagtaggtgatttattcaaaccaattcttggtaaaggaataaatttggaa
aaaattctcaaacaactagatgattaa
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