Pectobacterium odoriferum: BCS7_00560
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Entry
BCS7_00560 CDS
T03424
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pcv
Pectobacterium odoriferum
Pathway
pcv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BCS7_00560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcv03400
]
BCS7_00560
Enzymes [BR:
pcv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BCS7_00560
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BCS7_00560
DNA repair and recombination proteins [BR:
pcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BCS7_00560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AIU86851
LinkDB
All DBs
Position
127362..128171
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGISPYLVGHTILYAEVRNTRLRWPVSAEVLSLSDEPVLSVRRRAKYLL
IELTRGWIIVHLGMSGSLRVLPEYSEPEKHDHVDLVMDSGKVLRYTDPRRFGAWLWTDNP
ETCSVLAHLGPEPLEAEFSADYLYHASRGKKTAIKQWIMDNKVVVGVGNIYASESLFAAG
IHPDRTAGSLNENEAAILVSVIKQVLQLSIEQGGTTLRDFLQSDGKPGYFAQELRVYGRN
GEPCRTCGTLIETAKHGQRSTFFCRRCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggttgaaaccagtcgtcggggtatttccccttatctcgttggt
cacaccatcctttatgcggaagtgaggaacacgcgcctgcgctggccggtatccgctgag
gttctctcgctgagcgatgaacccgttctcagcgtgcgtcggcgggcaaaatatctgctg
attgagttgactcgcggctggattattgtgcatctcggcatgtctggcagcctgcgggtg
ttgccggaatatagcgaaccggagaaacacgatcatgttgatttggtgatggatagcggt
aaggtgctgcgttataccgatcctcggcgttttggtgcctggctgtggacggataaccct
gaaacctgctcggtattggcgcatctcgggccagaaccgttagaggcggaattctcagca
gattatctttatcatgcttcacgcggtaaaaagacagcaatcaaacagtggattatggat
aacaaagtcgtcgtcggcgtaggtaatatttacgcgagcgaatcgctgtttgctgcgggt
atccatcctgacagaacggctggatcgttaaatgaaaacgaggcagccatattggtgagc
gtgattaaacaggtgctacagctttcgattgagcaggggggcacgacgctgcgtgacttt
ttgcaatcagatggcaaacccggttatttcgcgcaggagctgcgagtctatggccgcaac
ggtgaaccttgtcggacatgcggaacgctgatagaaaccgcaaaacacgggcagcgcagc
acgtttttctgtcgtcgctgtcagaagtaa
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