Phascolarctos cinereus (koala): 110199398
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Entry
110199398 CDS
T05867
Symbol
COL11A2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw04820
Cytoskeleton in muscle cells
pcw04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110199398 (COL11A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110199398 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcw00536
]
110199398 (COL11A2)
Glycosaminoglycan binding proteins [BR:
pcw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110199398 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
110199398
NCBI-ProteinID:
XP_020829874
UniProt:
A0A6P5JFM2
LinkDB
All DBs
Position
Unknown
AA seq
1737 aa
AA seq
DB search
MERCSRCRRLLLLVPLVLGLSAPPPARAGGPPVDVLRALQFPSLPDGVRRVVGVCPADVA
YRVTRPAQLSAPTRQLFPGGFPTDFSLLSVLRPNPGLQAPLLTLYSAQGVRQLGLELGRP
PRFLYEDQTGRPRPPALPAFRGISLADGKWHRVAVAVKGHSVTLIVDCKKRVTRPLPRSA
RPVLDTRGVLIFGARILDDEVFEGDIQQLVIVPGAQAAYESCERRQLYCEGSRGERPQNQ
EPHRARRSQTREAHRLHRPQNQEPQRQSPDSFYYDYEPPYYDVMTTGTTPDYQDPPLGEE
DGTQESNPLLPPEEEQTDPEGPPTAGRFRAEEYGEGTTDPPPGPYDYTYGYGDDYREETE
LGPALSAETTHSGAAARGVRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPPGIQGNP
GPVGDPGERGPPGRAGLPGSDGTPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQ
QARLALRGPPGPMGYTGRPGPLGHPGSPGLKGESGDLGPQGPRGPQGLSGPPGKAGRRGR
AGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGESGSQGLPGPPGEDGERGDDGEIGP
RGLPGESGPRGLLGPKGPPGIPGPPGVRGIDGPHGPKGNLGPQGEPGPPGQQGTPGTQGL
PGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGP
RGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGP
NGDPGPIGLVGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGANGEKGARGLSGKSGPRGE
RGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGK
DGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGESGPMGERGHPGPPGPPGEQGLTGP
SGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTGGGGGLKGNEGPPGPPGPAGSPGE
QGVAGTGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV
AGEDGDKGEVGDAGQKGSKGNKGEHGPPGPPGPLGPLGQPGAAGVDGEPGARGPQGHFGA
KGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGP
PGGVGNQGPLGEKGEPGESGSPGVPGEPGVKGPRGERGEKGESGQPGEAGPPGPKGPTGD
DGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDQGEDGEAGQPGSPGPTGENGPPGPPGK
RGPAGTAGPEGRQGEKGAKGEQGAVGAPGKTGPVGPAGAAGKPGPDGLRGIPGSVGQQGR
PGATGPAGPPGPVGPPGLPGLRGDPGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGA
HGQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGQAGPKGEKGVQGPPGHPGPPGE
VIQPLPIQMPKKSRRSVDASQLMQEDEAGEAGGAPGAPGGLEEIFGSLDSLRDEIEQMRR
PAGTQESPARTCQDLRLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVSPRDDV
TQFSYVDSGGSPVGVVQLTFLRLLSVSAHQDVSYPCTGGARDGPLRLRGANEDELSPETS
PYVKEFRDGCQTHQGRTVLEVRTPLLEQLPVLDASFSDLGAPPRRSGVMLGPVCFQG
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtgcagccgctgcagacgtctccttctgctggtccctttggtgctggggctg
agcgcgcctcctccagcccgagcaggggggccccctgtggatgtgctccgtgctctccag
tttccctcactccctgatggtgtccggagggttgttggtgtctgtccagctgatgtggcc
tatcgagtgacccggcctgcccaactcagtgctccgaccaggcagttattcccaggtgga
ttccccactgatttctcattgctgtctgtgctccggccaaatcctggtctccaggcccct
ctgttgaccctgtacagtgcccaaggtgttcggcagttggggctagagcttggccggccc
ccccgattcctgtatgaagatcagactgggcggcctagaccccctgctttgcctgctttc
cgaggcattagcttggctgatggcaagtggcatcgtgtggctgtggctgttaagggccac
tctgtcaccctaattgttgactgtaagaagcgggtcacccggcccctcccccggagtgcc
cgccctgttctggacacccgtggagtcctcatctttggtgcccgaatcctggatgatgag
gtctttgagggtgatatccagcaacttgtcatcgtccctggggcccaggctgcctacgaa
tcctgtgagcgacgacagctgtactgtgaggggagccgtggggagagaccccagaatcaa
gagccccaccgagctcgcagatcccagacaagggaagcacacagactccataggccccaa
aaccaggaaccccagagacagtcccctgattctttctactatgactatgagcccccttat
tacgatgtgatgaccacagggaccacccctgattaccaggaccctcccctaggtgaagaa
gatgggacccaggagtccaaccccctgctaccccctgaggaggagcagacagaccccgag
ggtccccccaccgctggcaggtttcgagctgaggaatatggggaggggaccacagatccc
cctccaggtccctacgattacacctatggctatggggatgattatcgggaggagacagag
cttgggccagccctctctgctgagaccacccattcaggagccgctgcccgtggagtccgg
gggctgaagggagagaagggagaaccagctgtcttggaacctggaatgctagtggaaggg
ccaccaggccctgaaggacctgcgggattgactggcccccctggaattcaggggaatcct
ggtcctgttggtgatcctggagaaaggggtcccccaggccgtgcaggtcttcctggctca
gatgggacccctggtcctcctggaacatcacttatgcttcctttccggttcggcagtggt
ggtggggacaagggtcctgtggtggcagctcaagaggctcaggcccaggctatcctgcag
caggctaggttggcgctccggggtcctcctggccccatgggctatacaggccgccctgga
cccctgggccatcctgggagtcccggacttaagggagaatctggagacttaggccctcag
ggcccacggggtccccagggcctttcaggccccccaggcaaagctggacgcaggggtcgt
gctggagctgatggagcccgagggatgccaggggagcctggggtgaagggtgaccgagga
tttgatgggctcccagggcttccaggagagaaaggacacagaggtgagagtggatcccaa
ggtcttcctggtcctccaggggaggatggagagaggggagatgatggagaaattggacca
cgaggcctgcctggggagtcgggtccccgaggtcttttgggccccaaaggtcctcctgga
atccctggacccccaggagtcagaggcatcgatggaccccatggccccaaaggaaacttg
ggtccccagggagagcctggccctcctggacaacagggtacaccaggaacccagggtctt
cctgggcctcaaggtgccattggcccccatggagagaagggtcctcaagggaaaccaggt
cttccagggatgcctggctccgatggacccccgggccatccaggaaaggagggtccacca
ggaaccaaagggaaccagggcccatctggtccacagggtcccctaggataccctggacct
cgaggtgtcaagggtgtggacggaattcgaggcctgaaaggtcataagggagagaagggg
gaagatggttttcctggttttaaaggtgacatgggtgtgaaaggtgaccgaggtgaggtt
ggagtccctggttcaagaggagaagatggtcctgaggggccgaagggaagaactggacct
aatggagacccaggccccatagggcttgtgggggagaagggcaaactgggtgttcctggt
ctgcctggatacccgggacgtcagggacccaaggggtcacttggattccctggatttcct
ggtgccaatggagagaagggagcccggggcctgtctgggaagtcagggcctcgaggggag
cgtggtcccacgggtccacgaggccagcgaggacctcgaggtgccacgggaaaatcagga
gccaagggaacgtctggtggtgatggtccccatggtcccccaggggagaggggtcttcct
ggacctcagggtcccaatggcttccctggccctaaaggtcccccaggcccccctggtaag
gatgggcttccaggacaccctggccaacgaggagaagtgggtttccaaggaaagacagga
ccccctggacccccaggggtggtgggacctcagggagctgcaggagagtcaggaccgatg
ggggaacgaggccatccaggcccccctggtcccccaggagagcagggactgactgggccg
tctggcaaagagggaaccaagggagaccctggcccccctggagctcctgggaaggatgga
ccagctggtttgaggggcttccctggcgaaaggggcctcccaggcactggaggaggtggt
ggcctgaagggaaatgaaggtccacctggccccccaggccctgcgggctctcctggagag
cagggtgtggcaggcacaggaggacccattggtcccccaggaaggcctgggcctcagggt
cccccgggtgctgctggagaaaaaggtgttccgggtgagaaaggtcccattggcccaact
ggccgggatggtgtccaagggcctgtggggctacctggtcctgctggccccccaggtgtg
gcaggagaagatggagacaagggtgaggttggtgatgctggacagaagggcagcaaagga
aacaagggtgaacatggccctcctggaccccctggaccactgggtcccctgggtcagcct
ggagctgcgggagtagatggagaacccggtgctcggggaccccagggacattttggagcc
aaaggagatgagggaacaaggggatttaatggccctcctggacccatcggcctgcagggt
ttaccaggcccttcaggagagaaaggagagacaggagatgtgggacccatgggcccacct
ggcccaccaggaccccgaggccctgctggacctaatggagcagatggtccacaaggcccc
ccaggaggtgttggaaaccaggggcctcttggagaaaagggggaaccaggagagtcagga
tctccaggagttcctggggaacctggagtcaagggccctagaggggaacggggagagaaa
ggagagtcaggacaaccaggggaagctggaccacctggacctaagggccccactggtgat
gatggcccaaaaggaaaccctggccctgttggttttcctggtgaccctggccctcctgga
gaagggggtccccgaggtcaggatggtgctaaaggtgaccaaggggaggatggagaagct
ggacagcctggatccccaggtcctactggagagaatggtccccctggacctcctggcaag
aggggtcctgcgggtacagctggccctgagggtcgacaaggagagaagggagccaagggg
gagcagggtgcagttggggctcctggaaagacaggaccagtgggtccagctggagcagca
ggaaaaccaggccctgatggtctgaggggaatcccaggctcggtgggacaacagggacga
cctggagccactggaccagctgggcctccaggtcctgtgggacctcctggcctccctggg
ctcaggggtgaccctggagccaaaggagaaaagggtcaccctggtctcattggcttgatt
ggccctcctggagaacaaggggaaaagggtgaccgaggacttcccggtccccaaggtgcg
cacggacagaaaggagagacggggatccctggagcatctggcccaattggtcctggagga
ccccctggccttcctggacccgctggccccaaaggtgctaaaggagcgacgggtcaagct
ggacccaagggagaaaaaggcgtccaaggtccacccggccatccgggtcctcctggagag
gtgatccagccactgcccatccagatgcccaagaagtctcggcgttcagtagatgcgagc
cagctgatgcaggaggatgaggctggagaggctgggggagcccctggggcccctgggggc
ctggaagagatatttggctccctggattccctccgggatgagattgagcaaatgaggcgc
cctgcaggaacccaggagagcccagcccgaacctgtcaggacttgagactgtgtcaccct
gagcttcctgatggtgaatactgggtcgaccctaaccaaggctgtgccagggatgctttc
cgtgttttctgtaacttcacggcaggaggagaaacctgtgtatcacctagggatgatgtc
acacagttctcctatgtggactctgggggatccccagtgggtgtggtccagctcacattc
ttgcgcctgcttagtgtatctgctcaccaagatgtctcctacccatgtacaggaggggct
cgggatgggcccctccggctgcggggagccaatgaggatgaactgagcccagagactagt
ccctatgtcaaggaattcagagatggctgccagacacatcagggccgaacagtgcttgaa
gttcgaacacccctactggaacagcttcctgtgttggatgcttccttctcggacttgggg
gccccccctaggcggagtggagtcatgctggggcctgtctgtttccagggctag
DBGET
integrated database retrieval system
