Paenibacillus crassostreae: LPB68_18905
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Entry
LPB68_18905 CDS
T05196
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcx
Paenibacillus crassostreae
Pathway
pcx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LPB68_18905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcx03400
]
LPB68_18905
Enzymes [BR:
pcx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LPB68_18905
DNA repair and recombination proteins [BR:
pcx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LPB68_18905
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AOZ94049
UniProt:
A0A167FUJ6
LinkDB
All DBs
Position
complement(4091299..4092192)
Genome browser
AA seq
297 aa
AA seq
DB search
MNHMSLPSIPMAPITSPNIPTGSEWGYQIKWDGVRTLVRLDGNGAVELFSRRLEPRNVTF
PEIVTLLEPLKIGPCVLDGEIAYFDGTRPNFQRVRLGVRKRTYDESLIFVMFDILYDNYV
DVRNLPFHERYRRLLAKFPTKDPRLFVTDLFEDGQALWDWLNEREWEGIISKRLDSPYTE
GKKHKDWFKKRKEVRLVGDVVGIKLRNGQISSLVLKYEDRYIGHVSGLDNATKKVLQSFM
QDHPGECPFPSLSQGMKKSKIVWLSVHFPCKVTALEFTDSGLLRQPKLIGFGDHDDN
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacatgtcacttccctctatacccatggcccccattacttctcccaatatacca
acaggatctgaatggggatatcaaatcaaatgggacggagttcgaacgttagttcgatta
gatggtaacggtgcagtagaacttttctcgcgacgcctagaaccacgaaacgttaccttt
cctgaaattgtaaccttgttagaaccattaaagattggaccgtgtgtacttgatggtgag
atagcttactttgatggaactagacccaattttcaacgagtacgtctaggggtgcggaaa
cgcacttacgatgaatcgcttatttttgttatgttcgatatactatacgataattacgtc
gatgtacgtaacctaccgtttcatgagcgatatcgtcgactattagcaaaatttccaacg
aaagatccacgtctattcgtaacggatctatttgaagatggacaagcattatgggattgg
cttaatgaacgtgaatgggaagggattatatcgaaacgcttagacagtccatataccgaa
ggtaaaaaacacaaagattggttcaaaaagaggaaagaggttcgtctcgtaggagatgtg
gtcggaattaaattaagaaatgggcaaatatctagtcttgtattgaaatacgaagatcgg
tacataggacatgtatccggattggataacgcaacaaaaaaagtactacaaagttttatg
caagaccatcctggagaatgcccttttccttcactatcgcaaggcatgaaaaaatctaaa
atcgtatggttaagtgtgcatttcccatgtaaagtaacagccctagaatttacagactct
ggtctacttcgccagcctaaattaattggattcggagatcacgatgataattaa
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