Phoenix dactylifera (date palm): 103696209
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Entry
103696209 CDS
T03274
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103696209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103696209
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103696209
mRNA degradation factors
5'-3' decay
Decapping complex
103696209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
Motif
Other DBs
NCBI-GeneID:
103696209
NCBI-ProteinID:
XP_038986472
UniProt:
A0A8B9ALB6
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Position
1:25192569..25210019
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AA seq
1413 aa
AA seq
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MASPAGNPNPSGPFELHKLFKPPNPSPNPNPSAPPPVPLPSSYGAVLPPAYPSPSPGAFS
YPPXTPPFHHHPFLHYPHDPLQRPPVSYPAAPPHLPSPNPNPNPNPNPSPGPNHGARLMA
LLGNTATSHLESTVSMPPSSSVPSEFSAPANPPILHAIPSAPPATLASIGQPAPARLPSS
KMPRGRHLVGGDRAVYDVDSRLPGESQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYICY
GLKLGAIRVLNINTALRSLLRGHTQRVTDMAFFAEDVHFLASASVDGRVFVWKIDEGPDE
DNKPQITGKIIIAVQIVGDGESCHPRICWHSHKQEILFVGIGNRVLKIDITKVGRGKEFS
AEEPLRCPIEKLIDGVHFVGKHDGEVTDLSISQWMTTRLASASKDGMVKIWEDRKAVPLT
TLRPHDGQAVNSVAFLTSPHRPDHINLITAGPLNREVRIWASAGEEGWLLPNDSEAWQCT
QTLDLRSSSEPRLEEAFFNQAVVLPRASLIILANAKKNAIYAVHVDYGPYPAATRMDYIA
DFTVAMPILSLTGTNDSLPDGEQVVQVYCVQTQAIQQYALDLSQCLPPPGDNVALGKDSC
ISRAFDTPSSEGVPVTEPSRGPMVSDLPVGSASPKPPLTDRSTENPPITSYPVTSAASEG
NGIHELSTSNVEVKPSAPPLPSSDADAANILSSPVPLNLDPAGKLPALKSPPKGFEQVPS
PGGRDVDPSNVDYSVDRRVDTVITSTADVPSMSDNLGKDGSKAGQNDISMVPNHRLMFKL
GGNTTHLVTPSEILSGAISSSESSHVNQGPKGEEVKVPDVTVNNKLENVEMELKVAGESR
SSQNEEFDSQKEAQVVTVESKEKSSQISESNIEMAKECEAETETCSMEESRVVEDIAVAE
SLEQPSSTGEEEIQDSTKDMPEKVAESVGTAATAAKGKKSKGKQSQASGLTSPSSSPFNS
ADSSNELGNSVVAPSTDTVFPQILAMQDTLNQLMTMQKEMQKQMSVMVAVPVTKEGKRVE
TALGRSMEKAIKANVDALWARCQEENAKHEKLERDRTQQITSLITSCMSKDWPAMLERAL
KKEISAVGPVIARAITPIIEKTISLAITDAFQRGVGDKAVNQLEKTVNSKLEATVARQIQ
AQFQTSGKQALQDALRSSLESSVIPAFEQSCKAMFEQVDAAFQKGMTEHTAAAQQQFEAS
HTPLALTLRDAINSTSTITQNLTTELIDGQRKLLALLAAGNTKALNPTAMQQNNGPMAAH
PEMALSVQQVEAPLDPTKELTRLISERKYEEAFTMALQRSNVSIVSWLCSQVDLHAICST
VPLPLNQGVLLALLQQLACDISNETSHKVVWMTDVAVAINPTDPMITLHVRPIFEQVYNI
LAHQRSLPTTTASDAANIRLIMHVINSVLMSCK
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggcctcccccgccggaaaccccaacccttccggccccttcgagctgcacaagctcttc
aagcccccaaaccccagcccgaaccctaaccccagtgcccctcctcccgttcccctgccc
tcctcctacggggccgtcttaccgccggcgtacccctctccgtcacccggcgccttctcc
taccccccanccaccccgcccttccaccatcaccctttcctccactatccccacgacccc
ctccaacgcccccccgtctcctacccggctgcccctccccacctccccagccccaatccg
aaccctaatcctaaccctaaccctagtcccggccccaaccacggcgcccgcctgatggcg
cttctgggcaacaccgctacctcccacctcgaatccacggtctcgatgcctccctcatcc
tccgtaccgtcggagttctccgccccggcgaaccctccgatactccatgccatcccctcc
gcgcctccggcgaccctggcttccatcggccaaccggcgccggcgaggttgccgagcagc
aaaatgccgcggggaaggcacctggtgggcggggaccgagcggtgtatgacgtggactct
cggctgccgggggagtcccagccgccccagctcgaggtcactccgatcaccaagtacacg
tcggatccggggcttgttttgggtcgtcagatcgcggtcaaccggacgtacatctgctac
gggctcaagctcggtgcgattcgcgtgctcaacatcaacacagcactgagatcgctgctc
cgggggcatactcagagggttacagacatggctttctttgctgaagatgtccactttctg
gccagtgcaagtgtagatggaagggtttttgtatggaagattgatgagggacctgatgag
gacaataagccacagataactggaaaaatcataattgctgttcagattgtaggagatgga
gaatcctgtcatccacgaatctgttggcactctcacaaacaagaaattttatttgttgga
attggaaaccgagttctaaaaatcgacataacaaaagtggggagaggaaaagaattttct
gcagaggaacctctcagatgcccaattgagaagctgattgatggtgtgcattttgtgggt
aagcatgatggtgaagtgacagatttgtcaatatctcaatggatgacaactcgtttggct
tcagcatcgaaagatggcatggttaagatctgggaagatcgtaaagcagttccccttaca
actttgaggccgcatgatggtcaagctgtcaactcagttgcattcttgacatcgcctcac
agacctgatcacattaatctcatcacagcgggtcctttgaatagagaagtgagaatatgg
gcctctgctggggaagaaggttggcttttgcctaatgattctgaagcatggcagtgcact
cagactttggacttgagaagttcttcagaacctcggcttgaggaggcattttttaaccaa
gctgtggttttgcctcgcgcaagccttataatacttgcaaatgctaaaaagaatgctata
tatgcggttcatgtagactatggtccatatccagcagctacacgcatggactatatagca
gattttactgtagcaatgcctattttgagccttactggaacaaatgactcccttcctgat
ggggaacaggtggttcaggtttactgtgtccagacacaggctattcagcagtatgcattg
gatttatcacagtgtttgccaccacccggtgataatgttgcattggggaaggattcttgt
atctcacgtgcttttgacacacctagttcagaaggggtaccagttacggaaccatcccgt
ggacctatggttagtgatcttcctgtaggaagtgcttcacccaaacccccattaacagat
agaagcactgagaatccacctataacttcatatcctgtaacttcagcagcttcagagggt
aatggtattcatgaactgtctacatcaaatgttgaagttaagcccagtgctcctccactt
ccaagttcagatgctgatgctgcaaacattttatcttcacctgttcctttgaatttagac
cctgcaggaaagctacctgccttgaaaagccctccaaaaggttttgagcaggtaccatca
cctggtggccgcgatgttgacccatcaaatgttgattattcagttgataggagagtggac
actgttatcacaagtacggctgatgttccttccatgagtgataacttaggaaaggatgga
tctaaagctggccaaaatgatatttctatggtgccaaatcatcgtcttatgtttaagctg
ggtggcaacacaacacatctggtaactccatcagaaatcttatcaggtgcaatatcttca
tctgagagcagtcatgtcaatcaaggtcctaaaggtgaggaagtaaaggttccagatgtg
actgttaataataaactggagaatgtagaaatggaattaaaagttgcgggtgagagtaga
tcaagtcagaatgaggaatttgactcccaaaaagaggctcaagttgttactgtagaaagc
aaggagaaatcctcccagatttcagaatcaaacattgagatggccaaggaatgcgaggca
gaaactgaaacttgcagtatggaagaatctcgcgttgttgaggacatagctgttgctgag
tcattggaacaaccttcaagtactggcgaggaagaaattcaagacagcacaaaggatatg
cccgaaaaggtggcagaatctgttggtactgcagcaactgctgccaaagggaaaaagtca
aagggaaagcagtctcaagcatctgggttaacatccccttcctcaagtccttttaactct
gctgattcttcaaatgaactggggaacagtgtagttgctccttccactgacacagtgttt
ccccaaattctggcaatgcaggatacactgaaccagcttatgaccatgcaaaaggaaatg
cagaagcagatgagtgtaatggtggctgttcctgtcaccaaagaaggcaaaagagtggag
acagccttaggccggagcatggagaaagccatcaaggccaatgttgatgctttgtgggcc
cgttgccaggaggaaaatgcgaagcatgagaagctcgagagagatcgaacgcagcagata
acaagtctgatcacgagctgtatgagcaaggattggcctgccatgttggaaagagcattg
aaaaaggaaatctctgcagttggtccagtcatagctcgtgcaattacgccaattattgaa
aaaacaatttctttagcaataactgatgcatttcagagaggggttggagacaaagcagta
aatcagttggagaagactgtcaattcaaaacttgaagctacggtggctaggcaaatccaa
gcacagttccaaacttctgggaagcaagctcttcaggatgccttaaggtcttctctagaa
tcttcagtgattcctgcatttgagcaatcgtgcaaagccatgtttgaacaagtggatgct
gcattccagaagggaatgactgaacatactgctgcggctcagcagcaatttgaggcatca
cacactcctctcgctctcactttgagggatgcaatcaattctacatcaacaatcacccaa
aatcttactactgaattgattgacggccagcggaagcttttggctcttcttgctgcagga
aacacaaaggcattgaatcccactgctatgcagcaaaacaatggcccaatggctgctcat
cctgagatggccttgtctgtacaacaggttgaggcacctctggatccaacaaaggaacta
acaaggttaatttctgagaggaaatatgaggaagcgttcaccatggctcttcagagaagt
aatgtttccatcgtgtcttggctatgttctcaggttgatttgcatgcaatttgttccacg
gtgccacttcctctaaatcaaggggtactgctagctcttctgcagcagttagcatgtgat
atcagcaacgagacttcccacaaagtggtatggatgacagatgtagccgtagcaatcaat
ccgacagatccgatgatcacattacatgtacggccaatatttgagcaggtctataacata
ctggcccaccaaagatcacttcccacaaccacggcatctgatgccgccaacatccgactg
ataatgcatgttatcaattcagttttgatgagctgtaaatga
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