KEGG   Phoenix dactylifera (date palm): 103712335Help
Entry
103712335         CDS       T03274                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03030  DNA replication
pda03410  Base excision repair
pda03420  Nucleotide excision repair
pda03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pda00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    103712335
   03410 Base excision repair
    103712335
   03420 Nucleotide excision repair
    103712335
   03430 Mismatch repair
    103712335
Enzymes [BR:pda01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103712335
    6.5.1.6  DNA ligase (ATP or NAD+)
     103712335
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     103712335
DNA replication proteins [BR:pda03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    103712335
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     103712335
DNA repair and recombination proteins [BR:pda03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     103712335
   NER (nucleotide excision repair)
    Other NER factors
     103712335
   MMR (mismatch exicision repair)
    Other MMR factors
     103712335
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 103712335
NCBI-ProteinID: XP_008797049
UniProt: A0A2H3YD69
LinkDB All DBs
Position
Un
AA seq 747 aa AA seqDB search
MLLRAPSLSFLNFFPPPPPPFLSRLLFSKSKTLNPSALLRLSSMSARRTVAEALMGSARA
AAAAARKKAKHDKPPSPSPSPPPEPSPPRPKPAKTLRTQPDEKKKNAALELRKKCTDFNP
GAAAYWKDGEPVPFSFLVHAWELIGNESGRIAMTEILCNAFRTVIATTPGDLLATVYLTA
NKIAPPHVGLELGIGEASLIKALAEAYGRKEEHVKKQNSELGDLGLVAKASRSTQKLMFQ
PKPLTINKVFNTFLAIAKESGANSQDKKKNHIKGLLVAATECEPLYITRLLQSKMRIGLA
EKTVLVALGHAAAYSETCPRPPLQTQSPLEKAAKIIKQVYSVLPSYDKIVPALLQVGVWK
LPEACNFTLGVPIGPMLAKPTKAVSEIIDKFQGMEFTCEYKYDGERAQIHYMEDGSVEIY
SRNAERNTGKYPDVVSSISRFKKETVKSFVLDCEIVAYDHEKQKILPFQVLSTRARKGVI
LSDIKVTVCTFGFDILYKNGQPLLQEQLKVRRQHLYSSFEEVPGVFQFATAIITNDVEEI
QKFLEAAVNSSCEGLIIKTLDKDATYEPSKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHG
RGKRTGVYGSFLLACYDEHNEEYQTICNIGTGFSESQLEERSASLRYKAIPTPKPYYRYA
DTVNPDVWFEPAEVWEVKAADLSISPVHRAASGIVDPNKGISLRFPRLVRVRDDKSPEQA
TTSDQVADMYRAQKINHTNNHEEEGDD
NT seq 2244 nt NT seq  +upstreamnt  +downstreamnt
atgctgttgagagctccgagtctatcattcctcaattttttccctcccccaccgcctccc
ttccttagccgcctccttttctccaaatccaaaaccctcaacccctccgccctcctccgc
ctctcctccatgtccgcccgccggaccgttgccgaggccctcatgggcagcgcccgcgcc
gccgccgccgccgcccgaaagaaggccaagcatgacaaacccccatccccatccccatcc
ccgcccccggaaccctcccctcctcgcccgaagcccgccaaaaccctacgcacccaaccg
gacgagaagaagaagaacgccgccctcgagctccggaagaagtgcaccgatttcaacccc
ggagccgccgcttactggaaggacggcgagccagtcccgttctcgttcctcgtgcacgcc
tgggagctgatcggaaatgagtcgggccggattgccatgacggagatcctctgcaatgcc
tttcggacggtgatcgccaccacacccggggatcttcttgccaccgtttacctcacggcg
aacaagattgctccgccccacgtgggtcttgagcttggaattggagaagcatccctcatc
aaggcgcttgccgaggcttatggtcggaaggaggagcatgtgaagaagcaaaacagcgaa
ttgggtgacttgggtcttgttgcaaaagcaagccgttcaactcaaaagttgatgttccag
cctaaacctttgacaattaacaaggttttcaatacattcctggctattgcaaaggaatct
ggggcaaatagtcaggacaagaaaaagaatcatataaagggacttctggttgcagcaact
gaatgtgaacctctgtatataactcgtcttctacagtcaaaaatgcgtattggtttggcg
gagaaaactgtccttgttgctcttgggcatgcagctgcatattctgaaacatgtccaagg
ccgcctctgcaaactcaatctccccttgagaaggctgcaaaaattatcaaacaagtatat
tctgtacttccgagctatgacaaaattgtccctgctcttcttcaagttggggtatggaaa
cttccagaggcatgcaattttactttaggtgtgcctattggacctatgttagcaaaacca
acgaaggccgtatcggagatcattgacaaattccagggaatggagttcacctgtgagtac
aaatatgatggtgaacgtgcccagatacactacatggaggatggatcagtcgagatatac
agtcgtaatgcggaacgaaatactgggaagtacccggatgttgtcagttctatctcaaga
ttcaaaaaggaaactgtaaaatcatttgtgctggattgtgaaattgttgcttatgaccat
gagaagcagaagatcttacctttccaggtcctcagcactcgtgctcgtaagggtgtgatc
ttaagtgatataaaagtcacagtctgcacctttggctttgatattctgtataaaaatggc
caacctcttctccaggagcaactcaaagttcgtcgacagcatctctacagttcttttgag
gaagtgccaggagtattccagtttgcaactgccataataacaaatgacgtcgaggaaata
cagaaattccttgaagcagctgtcaactccagttgtgaaggattgattatcaaaacattg
gataaagatgccacatatgagccttctaagcggtctaacaactggctgaagttaaagaaa
gattacatggacagcattggtgactcactagatttggtgcctattgctgcattccatggt
cgtggaaaacgtacaggggtttatggttcgtttcttcttgcttgctatgatgaacacaat
gaagaataccaaaccatctgtaatataggtactggattttctgagtcacaacttgaagag
cggtctgcaagtcttcgctataaagcgattcctacaccaaagccatattatcgatatgct
gatacagtgaatccggatgtatggtttgagccagcagaggtttgggaggtgaaagcggca
gatttgagcatcagtcctgttcatcgtgctgctagtggcatagttgatccaaataagggt
atttctcttcgatttcctcgtttagtccgtgttcgagatgacaaaagccctgaacaagcc
acaacgtctgatcaggttgctgacatgtatcgtgctcaaaagattaaccacacaaataac
catgaggaagagggtgatgactaa

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