Phoenix dactylifera (date palm): 103723556
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Entry
103723556 CDS
T03274
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103723556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103723556
Spliceosome [BR:
pda03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103723556
Complex C
U5 SnRNP specific factors
103723556
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
Roc
Dynamin_N
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
103723556
NCBI-ProteinID:
XP_008812731
UniProt:
A0A8B7D411
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Position
1:complement(12959736..12965985)
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AA seq
997 aa
AA seq
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MDDSLYDEFGNYIGPEIESDRDSDDAGDSGDESPAGSARSDDEAAASPSPSANGWITASG
AGAGADDMDTDPAASQIVLAEDKKYYPTAEEVYGEGVETLVMDEDEQPLEQPIIKPVRTV
KFEVGVRDSSTYVSTEFLLGLASNPSLVRNVALVGHLHHGKTVFVDMLVEQTHEISTFDL
DSERHIRYTDTRIDEQERRISIKAVPMSLVLEDSNAKSYLCNIMDTPGHVNFSDEMTAAL
RLADGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPTDAYFKLR
HTLEVINDLISSYSTSVGGTQVIDPVAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDY
LKFAARLWGDLYYHPDERVFRKKPPMGGGERSFVQFILEPLYKIYSQVIGEHKKSVETTL
AELGVTLSNAAYKLNVRPLLRLACSSVFGSATGFTDMLVQHIPSAKDAAAKKIEHIYTGP
QDSYITEAMKNCDPYGPLMVNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTLRVLGEGYSP
DDEEDMTVKEVTKLWVYQARYRIPISKAPAGSWVLIEGVDASIMKTATLCPLDMDEDVYI
FRPLRFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGEIY
LDSIMKDLRELYSEVEVKVADPVVTFCETVVETSSMKCFAETPNKRNKITMIAEPLERGL
AEDIENGVVSIDSKQKDISDFFQKRYDWDLLSARSIWAFGPDKQGPNILLDDTLPSEVDK
NLLSAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNASIAAEPLHRGGGQIIPTARRVV
YSSFLMANPRLMEPVYYVEIHTPIDCVSAIYTVLSRRRGHVTADVPKPGTPVYVVKAYLP
VIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVK
TRRRKGMSEDVSINKFFDEAMMVELAQQAADLHLQMM
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggacgatagtctctacgacgagttcggcaactacatcggcccggagatcgagtccgac
cgcgactccgacgatgccggtgactccggcgacgagtctcccgcgggctccgcccgctcc
gacgacgaggccgccgcctcaccgagcccctccgccaacggctggatcaccgcctccggc
gccggcgccggcgccgacgacatggacaccgaccctgccgcctcccagatcgtcctcgcc
gaggacaagaagtactaccccaccgccgaagaggtctacggcgagggcgtggagaccctc
gtgatggacgaggatgagcagcccctcgagcagcccatcatcaagcccgtccgcaccgtc
aagttcgaggtcggcgtgagggactcctccacctacgtctccaccgagttcctcctcggc
ctcgcctccaacccttcgctcgtccgcaacgtcgctctcgtcggccacctccaccacggc
aagacggtgttcgtggacatgctggtggagcagacccacgagatctcgaccttcgatctt
gacagcgagcggcacatacggtacacagacacgaggatcgatgagcaggagcgccggatc
tccatcaaggccgtgcccatgtcccttgtgctcgaggacagcaacgccaagtcctacctc
tgcaacataatggacactcccggccatgtcaacttctctgatgagatgactgctgctctc
cgccttgctgatggggctgtgctggttgtcgatgctgccgaaggtgttatggtaaatact
gagagggctatacgccatgcaatacaagaaagacttcccattgtagttgtgataaacaag
gtcgatagactgattacagagcttaagctgccaccaactgatgcttatttcaaactgcga
cacactttggaagttatcaatgaccttatctcttcttactccactagtgtaggaggcacc
caagtgattgatcctgttgctgggaatgtctgttttgcaagtgcaactgctgggtggtca
ttcaccttgcagtcatttgctaagctttacgtaaaactccatggcattccttttgactat
ttaaagtttgcagcccgtctatggggagacctgtattatcatcctgatgaaagggtcttc
aggaagaaacccccaatgggtggaggagaaagatcatttgtccagtttattctcgaacct
ttatacaaaatctacagccaagtaattggagagcataagaagagtgtggagacaactctt
gcggaacttggtgtaaccctaagcaatgccgcttataagttgaatgttaggcctttattg
aggttggcttgtagttctgtctttggatctgcgacaggatttactgacatgcttgtccag
cacatcccctccgccaaggatgctgcagcaaagaagatagagcacatatatacaggacct
caagactcatatattactgaggctatgaaaaactgtgatccttatggcccccttatggtt
aatgttacaaaactctatcccaagtctgactgtagtgtctttgatgcttttggccgagtc
tacagtggcaccatacagactggtcagaccttacgtgtactgggggaaggctattcacct
gatgacgaagaagacatgacagtcaaagaggttaccaaactgtgggtttaccaggctcga
taccgtattcccatcagtaaagcgcctgctggttcttgggttctaattgaaggtgtagat
gcctccatcatgaagactgcaacattatgtcctttggatatggatgaagatgtttacata
tttaggcctcttcgcttcaatacactgccagttgtaaaaactgcaaccgaaccattgaat
ccaagcgagctaccaaagatggtggagggccttagaaaaatcagcaagagttatccttta
gctatcaccaaagtagaggagtcaggtgaacatactatactaggaacaggtgagatatat
cttgattccatcatgaaggatctcagggaactttactctgaagttgaagtcaaggtggca
gatccagttgtgactttttgcgaaacggtggttgagacttcctcgatgaaatgttttgct
gaaactcccaacaaaagaaacaaaattactatgattgcagagccactagagaggggtttg
gcagaagatattgagaatggtgttgtgagcattgactcgaaacaaaaggatatcagtgat
ttctttcagaaacgttatgattgggatttgctttcagcaaggagcatatgggcatttggg
ccagacaagcagggccccaacattctactagatgatactctcccaagtgaagttgataag
aacttgctgagtgctgtcaaggactccattgttcaaggatttcagtggggtgcccgggaa
ggtcctctttgtgatgaacctatccggaatgtcaaattcaaaattctaaatgcatctatt
gccgctgagcccttgcatcgaggaggtggtcagattattcccaccgctcggcgtgtggtg
tattcatctttcctcatggcgaacccgaggcttatggagcctgtttactatgtagagatc
catacaccaatcgattgtgtctctgcaatttatacggtgttgtcacgcagacgtggacat
gtaacagcagatgtccctaagcctggcacccccgtatatgttgtgaaggcatatttaccg
gtgatagaatcatttggctttgagacggacttgaggtaccatactcaggggcaagcattt
tgcctctctgtgtttgatcactgggccatagttcccggtgacccacttgataagagcata
gtcctccggcctctagaaccagcaccaattcagcaccttgcacgggagttcatggtgaaa
acaaggcgccggaagggaatgagtgaggacgtgagcatcaacaagttctttgatgaggct
atgatggttgagcttgctcagcaggctgcggatcttcatttgcagatgatgtaa
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integrated database retrieval system
