Phoenix dactylifera (date palm): 120107751
Help
Entry
120107751 CDS
T03274
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120107751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pda03400
]
120107751
Enzymes [BR:
pda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120107751
DNA repair and recombination proteins [BR:
pda03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120107751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
120107751
NCBI-ProteinID:
XP_038977106
UniProt:
A0A8B8ZS86
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MTDETVRFGVLCSMFEAMVRDRSAAKKRKRFRTLLDRVYTGRDYFSAVRLILPALDRERC
SYGLKESALAAALVDALGLAKDSPDALRLVNWRKGGARSGANAGNFALVAAEVLQRRQGM
ASGGLTIKELNDALDQLASKENSQTSFNREGKTAVLSGLIKKTNALEMKWILMIILKDLK
LGISEKSIFHEFHADAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLALRVT
DAATAWRKLHGRHVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKHGMLNVILQNIT
VERCILDGEMLVWDTSTQRFAEFGSNQEIAKAAREGLESDRQLCYVAFDILYVGDTSVIH
QSLTERHDLLRKVVKPLKGRLEILTPNGGLNDRRLQGEPCWSIVAYTVEDVERFFKETIE
NRDEGIVLKDLGSKWEPGDRSGKWLKLKPDYIHAGADLDVLIIGGYFGSGRRGGEVAQFL
MGLAVHSDSTSCPKRFVSFCRVGTGLSDEELDTLITKLKPYFRKNEYPKKVPSFYEVTNN
SKERPDVWIDSPDKSVILSITSDIRTIKSEVFAAPYSLRFPRIHRVRYDKPWHECLDVQS
FVDLVHSSNGNTQRGTDHGGLQNHGSKHVKSTKKGEKKNVSIVPAHLIHTDISGVKEETL
IFANMMFYFINVPPSSSVDYFHKIVVENGGTFSMNLNDSVTHCIAAERKGIKYQAAMRHR
DIIHYSWVLDCCKQKRLLLFHPKYYLFLADSSKRKFQEEIDTFSDYYYCDIDIADIKQVF
SNMHGPEYANNIDYYKKKYCPVEALCLFQGCCVYFYKSMSVINTCDEVISELALRRMRLE
ITMHGGEVCSGLQCATHLIVCSTTKEANNFDEIYKSFPSSQRHLLHDRRLHVVMHQWLED
SLETGKKLHEDSYNLKPDTLEEIKIDESRHNLVSPVTTINTEKQSVSRLIIGEKRKRDRP
THADTRKGRTGPRHKRTMRARIGNRLAKIDADEAENSDSSDETSMGKTLKSREESEIDIT
ESVGVKNQESFSDGSCQREALGSRKESQGDMEESEDIKYQAPHFSIQVAEYPQGSQIVTP
EDRTNERFDNVQTLNFTETGNKGTGEKLEQMVDPLRAILLDMIPSLSQNNVETGSSIPDG
KKAQPDPHTNPVKKKVSYKDVAGQLLKDG
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgagacggtgagattcggcgttctgtgcagtatgttcgaggcgatggtgagg
gatcggtcggcggcgaagaaacggaagcggttcaggacgctgctggaccgggtgtacacg
gggcgggactactttagcgccgtccggctcatcctcccagccctcgaccgggagcgatgc
tcgtacgggctcaaggagtccgccctcgccgccgccctcgtcgacgccctcggcctggcc
aaggactctcccgacgccctccgcctcgtcaactggcgcaagggcggcgcccgctcgggt
gccaacgccggcaacttcgcccttgtcgccgccgaggttctacagcgtaggcaaggaatg
gcttctggtgggcttacaatcaaggagttgaatgatgctcttgatcaactagcctcaaaa
gaaaatagtcaaacatcctttaacagggaagggaagactgctgttctttctggtctcatt
aagaaaacaaatgccctggaaatgaagtggattctaatgatcattcttaaagatctgaag
ctggggattagtgagaagagtatatttcatgagtttcacgcagatgctgaagatttgttc
aatgtcacttgtgacctaaaactagtctgtgaaaaactgaaagatcgaagtcaacgacat
aaacggcaggatatagaagtgggaaaagctgtaaggcctcagctagctctgagggtcact
gatgctgcaactgcatggaggaagcttcacggaaggcatgtggttgtcgagtgcaagttt
gatggtgatcgcattcaaatccacaagaatggagaagaaattcactttttttcacggaat
tttctcgatcatcctgagtacaaacatggcatgttgaatgttattttacagaacatcact
gttgagaggtgtattctggatggtgaaatgcttgtttgggacacgtcgactcaacgtttt
gcagaatttggttcaaatcaagaaatagcaaaggcagctagagaaggattagagagtgac
cgccagctgtgctatgttgcttttgatattctttatgttggagacactagtgttattcat
cagagcttgacagaaagacatgacctcctgcgaaaagttgtaaaacctttaaagggtcgc
ttagaaattctgacccctaatgggggtcttaatgatcgtcgtttgcaaggcgaaccatgt
tggtccattgttgcttatactgtggaagatgtggagagatttttcaaagaaactattgag
aacagagatgagggaattgtgttgaaggaccttggttccaaatgggaacctggtgatcga
agtggaaagtggttgaaattgaaacctgattacatacatgctggtgctgatctggatgtg
cttattataggaggatattttggttctggccgtcgtggaggagaggtagctcagtttttg
atgggtcttgcagtgcattcagattctactagctgtccaaaacgatttgtttcattctgt
cgagttggtactggtctctctgacgaggagcttgatactctcattaccaaattgaagccc
tatttcaggaagaatgaatatccaaaaaaagtgccatccttttatgaagtaacaaataat
tcaaaggagaggccagatgtttggattgacagccctgacaaatcggtcatactttcaata
actagcgatatccgaacaataaagtctgaggtatttgctgcgccatacagtttgagattt
ccacgtattcatcgagtgagatatgacaagccatggcatgagtgccttgatgttcagtca
ttcgtggacttggtacattcaagcaatggcaatacacagaggggaacagatcatggaggt
ctacaaaatcatggatcaaaacatgtaaagtccacaaagaagggagagaagaaaaatgtt
tccattgtccctgctcatttgatccataccgacatctctggtgttaaggaggagacactt
atatttgcaaatatgatgttttattttatcaatgttcctccatcctcttctgtagactac
tttcataaaattgtggttgagaatgggggaactttctcaatgaatctcaatgactcggtt
actcactgcattgcagctgagagaaaagggatcaagtatcaagccgctatgcgccacaga
gatatcattcactattcttgggtcttggattgttgcaaacaaaagcgtcttctacttttc
catcctaagtactacttatttcttgcagattcttcgaagagaaagtttcaagaggagatc
gacacattctctgattattattactgcgatatagatattgcagacattaaacaggtattc
agcaatatgcatggaccagaatatgcaaacaacatagattattataaaaagaagtactgt
ccggtggaagcattgtgcttgtttcagggttgttgtgtttacttctacaaatcaatgtct
gttataaatacctgtgatgaagtaatatcagagcttgctttaaggaggatgaggcttgaa
ataaccatgcatggtggtgaagtttgcagcggtcttcaatgtgctactcatctgatagtg
tgttcaacaacgaaagaagccaacaactttgatgaaatatataaaagttttccatcttct
caaagacacctactacatgacagaaggctacatgttgtgatgcatcagtggttggaagat
tcattagaaacaggcaagaagttgcatgaagattcttataacttgaagcctgatacttta
gaagaaattaagattgatgagagcaggcacaatctcgtatctcctgtaaccacaattaat
acagaaaaacagagtgtctctagactaattataggtgaaaagaggaaaagagataggccc
acgcatgctgatacaagaaagggtagaacaggtccaagacacaaacggacaatgcgggca
aggattggaaatagacttgcaaaaatagatgcagacgaagcagagaacagtgattcctca
gatgaaacttctatggggaaaaccctgaagtcaagggaagagtctgagattgacatcaca
gaaagtgtgggtgtcaaaaatcaagaatcattttcagatggaagttgtcaaagagaagcc
ttaggatcaaggaaagagtctcaaggtgacatggaggaaagtgaggatatcaaatatcaa
gcaccacattttagtattcaagtagctgagtatcctcaagggtctcagattgtaactcca
gaagatagaaccaatgaaaggtttgacaatgtgcaaactttgaattttacagaaacaggg
aataaaggaactggtgaaaaattggaacaaatggttgatccactgcgtgcaatattattg
gatatgataccaagtcttagccagaataatgtggaaactggaagctccattcctgacggc
aagaaagcacagccagacccccacaccaacccagtgaagaagaaagttagctacaaagac
gttgcaggtcaactcctcaaagatgggtaa
DBGET
integrated database retrieval system
