Phoenix dactylifera (date palm): 8890491
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Entry
8890491 CDS
T03274
Symbol
rpoC1, PhdaC_p012
Name
(RefSeq) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
8890491 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
8890491 (rpoC1)
03400 DNA repair and recombination proteins [BR:
pda03400
]
8890491 (rpoC1)
Enzymes [BR:
pda01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
8890491 (rpoC1)
Transcription machinery [BR:
pda03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
8890491 (rpoC1)
DNA repair and recombination proteins [BR:
pda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
8890491 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
8890491
NCBI-ProteinID:
YP_003540922
UniProt:
D4PBA2
LinkDB
All DBs
Position
Pltd:complement(21632..24419)
Genome browser
AA seq
682 aa
AA seq
DB search
MIDRYKHQQLRIGPVSPQQIRAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
FGPIKSRICACGNYRVIRAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
RLPSYIANLLDKPLKELEGLVYCDFSFARPISKKPTFLRLRGSFEYEIQSRKYSIPLFFT
TQGFETFRNREISTGAGAIREQLSDSDLRIIIDNSLVEWKELGDEGSTGNEWEDRKIRRR
KDFLVRRMELAKHFIRTNVEPEWMVLCLLPVLPPELRPIIQTDGGKLMSSDINELYRRVI
YRNNTLTDLLATSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQTFLIRGLIRQHVA
SNIGIAKSQIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHINLLSPAIGDPISVPTQDMLIGLY
VLTIRNRRGICANRHNTYNRGNYQNNTVDNNDYKYMKEKELYFCSSYDVLGAYRQKRISL
DSPLWLRWRLDQRVIGSREVPIELQYESLGTYHEIYEHYLIVGNVKKEIHCIYIRTTLGH
ISFYREIEEAIQGFCRAYSYAI
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaccggtataaacatcaacaacttcgaattggaccagtttctcctcaacaaata
agggcttgggccaacaaaatcctacctaatggagagatagttggagaggtgacaaaaccc
tatacttttcattataaaaccaataaaccggaaaaagatggattgttttgtgaaagaatc
tttggacccataaaaagtagaatttgtgcttgtggaaattatcgagtgatcagagctgaa
aaagaagacccgaaattttgtgaacaatgcggggtggaatttgttgattctaggatacga
agatatcaaatgggatacatcaaactcgcatgtccagtgacccatgtgtggtatttgaaa
cgtcttcctagttatatcgcgaatcttttagataaaccccttaaagaattagaaggcctg
gtatactgcgatttttcttttgctaggcccatatctaaaaaacctactttcttacgatta
cgaggttcattcgaatatgaaatccaatcccggaaatacagcatcccacttttttttact
actcaaggcttcgagacatttcgaaatcgagaaatctctacaggagcaggtgctatcaga
gaacaattatccgattcagatttgcgaattattatagataattcattggtagaatggaag
gaattaggagatgaggggtccactggaaatgaatgggaagatagaaaaattagaagaaga
aaggattttttggttagacgcatggaattagctaaacattttattcgaacaaatgtagaa
ccagaatggatggttttgtgcttattaccagttcttcctcccgagttgagaccaatcatt
cagacagatgggggtaaactaatgagttcggatattaatgaactttatagaagagttatc
tatcggaacaatactcttaccgatctattagcaacaagtagatctacgccaggggaatta
gtaatgtgtcaggagaaattggtacaagaagccgtggatacacttcttgataatgggatc
cgggggcaaccaatgagggatggtcataataaagtttacaagtcattttcagatgtaatt
gaaggcaaagagggaagatttcgtgagactctacttggtaaacgggtcgattattcggga
cgttccgtcattgttgtgggtccttctctttcattacatcaatgtggattacctcgagaa
atagcaatagagcttttccaaacatttttaattcgtggtctaatcagacaacatgttgct
tctaacatagggattgctaaaagtcaaattcgggaaaaagaaccgattgtatgggaaata
cttcaagaagttatgcgggggcatcctgtattgttgaatagagcacccaccttgcataga
ttaggcatacaggccttccaacccattttagtggaggggcgcgctatttgtttacaccca
ttagtttgtaagggtttcaatgcagactttgatggagatcaaatggctgttcatgtacct
ttatctttggaagctcaagcggaggctcgtttacttatgttttctcatataaatctcttg
tctccagctattggggatcccatttccgtaccaactcaagatatgcttatcggactctat
gtattaacgatcaggaatcgtagaggtatttgtgcaaataggcataatacatataatcgc
ggaaactatcaaaataatacagttgacaataatgactataagtatatgaaagagaaagaa
ctgtatttttgtagttcctatgatgtacttggagcttatcggcagaaacgaatcagttta
gatagtcctttgtggctccgatggagactagatcaacgtgtcattggctcaagagaagtt
cccatcgaacttcaatatgaatctttgggtacttatcatgagatttatgagcactatcta
atagtaggaaatgtcaaaaaagaaatccattgtatatacattcgaaccactcttggtcat
atttctttttatcgagaaatagaagaagccatacaggggttttgccgggcctattcctac
gctatctaa
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