Pocillopora damicornis (lace coral): 113666016
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Entry
113666016 CDS
T05773
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113666016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdam03021
]
113666016
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113666016
Transcription machinery [BR:
pdam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113666016
RNA polymerase I system
113666016
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
113666016
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW
Spt5-NGN
Spt5_N
DUF4744
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
113666016
NCBI-ProteinID:
XP_027037562
LinkDB
All DBs
Position
Unknown
AA seq
1014 aa
AA seq
DB search
MSDSDDSQYSDEEGEDITREEDDEEVDDDEEDDEEDYDEDDELYDDRQRKKKRRHNAGFI
IDEADVDDDYDEDVEPEDGYTDLIENDLGDEAIGDDLSGARRLQQMLGDKNAEELEAYYK
KKFAETSERYRDDYELQPEIQQQSLLPGVKDPNLWTVKCKIGEEKATVIGLMRKAIAQQF
TDEPLQIKSAVAVEGLKGYIYIEAYKQTHVKQAIEGFGTLRLGKWQQMMVPIREMTDVMR
VVKEVVSVKPRQWVRLKRGIYKDDLAQVDFVNTARNQVTLKMIPRIDYTRMRGLAKSAED
AAEKRKRKRKPPQKLFDADAIRGIGGDIGQDGDFMIFEGSRYRGGFMYKTLAMSAIVVEG
IKPTLLELQKFETAPEDVELEVPKGSREGSDEERHTFVTGDVVEVAEGDLANLKGTVLSI
DGNKITIMPKHEDLKDPLEFQAQELQKHFKMGDHVKVIGGRYEGDTGLIVRVEDNMVVLF
ADLTMHELKVLPKDLQLCTERSSGVDSMGQHQWGDMVQLDPQTVGVIIRLDRDMFSVLNQ
HGKVIQVKHQAVGRRRENKNAVALDSEQNTVQVRDIVKVTEGPHAGLQGEIKHLYRSFAF
LSSKMVIENGGVIVCRTKHLVLAGGGKAASNTLGISGFAPASPRITSPAREGAGGGGGGG
RGGHRGGMGRGRGRGGRDMSLISKTVRISQGPYKGYVGIVKDATETTARVELHSSVKTIS
VDRMRLTIVGGRPSQGSSVYKSTPMYGSQTPMYGAQTPMHGSRTPMYGSQTPTHGDGSRT
PHYGSMTPSHDPSRTPLHGGAWDPTQPNTPARNDDFDYNFDTSTPSPGVYGTPNPATPGG
YGGPYTPNTPGGGMYGSEPTYSPYTQTPSPAGFGNPMTPGSIAPISPAFNPHTPGAGMEE
SHADWVTTDIEVRINENHEDPQLMDKKGVVRTVSGNTCTVYLYDEKRDVSVSINNVDPGQ
PAKQDKVKVIFGDDRERIGTLINIDDPDGIIKMEQTEQLKILPLKFLAKIGQTV
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagcgacgattcacaatattcggatgaggaaggcgaggatatcactagggaa
gaggatgatgaagaagttgatgatgacgaagaagacgatgaagaggattacgatgaagat
gatgagctttatgacgacagacagagaaagaagaaaaggcgtcataatgctgggtttatc
atagatgaagcagatgttgatgatgattatgatgaagatgttgaacctgaagatggatac
acagatttaattgaaaatgatttaggtgatgaagcaattggtgatgatttatcgggtgcc
agacgtttacagcagatgcttggagacaaaaatgctgaagaattggaggcttattacaag
aagaagtttgctgagacatctgaaagatatagagacgactatgaactgcagccagagatt
caacagcaaagtcttctccctggtgtcaaagacccaaatttgtggactgttaaatgcaag
attggagaggagaaggcaacagtcattggcctgatgcgaaaagccattgctcagcaattc
actgatgaacctctgcagatcaagtcagctgtggctgtagagggactgaaggggtatatc
tatattgaagcttacaaacagactcatgtcaaacaggctatagaagggtttggtactctg
cgacttggtaagtggcagcaaatgatggtaccaattcgtgaaatgactgatgtgatgagg
gttgttaaagaagtcgtgtcagttaaaccaagacaatgggttcgattgaagagaggaatc
tataaggatgatcttgctcaggtggattttgtgaatacagcaagaaatcaggtgacactg
aagatgattcctagaatagactacacaagaatgagaggattagctaaatcagctgaggac
gctgcggaaaagagaaaaaggaaaaggaagccaccacaaaagttatttgatgctgatgcc
ataaggggtattggtggtgacattggacaggatggtgacttcatgatctttgaaggcagt
cgatatcgtggtggcttcatgtacaagacactggccatgtcagctattgttgtagagggc
attaaacccactctgttagagcttcagaaatttgaaacagcacctgaagatgtggaactg
gaagtaccaaaaggttcaagggaaggttcagatgaggaaagacatacttttgtgactggt
gatgtggtcgaagttgctgaaggggatttggcaaatttaaaaggcacagttcttagcatt
gacggaaacaaaatcaccataatgccaaaacatgaggacctaaaggatccattagaattc
caggcacaagaactgcaaaaacacttcaagatgggtgatcatgtcaaggttataggtggt
cggtatgaaggggacactggtctgattgttagagtggaagataatatggtggtacttttt
gcagatctaacaatgcatgagctcaaagttttacccaaagatcttcagctatgtacagaa
aggagcagtggagtggactccatgggacaacatcagtggggagacatggtacaattggat
cctcagacagtgggagttatcattcgtcttgacagggacatgttttcagtgttgaatcag
catggaaaagttattcaagtaaagcaccaggcagtgggaagaagaagagaaaacaaaaac
gctgtagcattggattctgaacagaacactgttcaagtccgagacatagtgaaagtcact
gaaggtccgcatgctggtctgcaaggagagatcaaacatctttaccgcagttttgccttt
ttatcctccaagatggtcattgagaacggtggagtcattgtatgcaggacgaaacatctt
gttctggcggggggtggaaaggcggcttcaaatacgttaggaatcagtggatttgcccca
gcttcaccacgaataacgagtcccgccagagaaggagctggtggaggtggtggtggcggc
cgaggtggacatagaggaggcatgggtcggggacgtggccgcggaggtcgcgatatgtcg
ctgatttccaagactgttcgaatctcgcaagggccatataaaggatatgttggtatcgtg
aaagatgctacagaaactactgctcgggtcgagcttcacagcagcgtaaagacgatttct
gtcgacagaatgagactcactatcgttggtggtcgacccagccaaggcagctctgtttac
aagagtacgcctatgtatggctcccagacaccaatgtacggtgcccagactcccatgcac
ggctcacggacgcccatgtacggttctcagaccccaactcatggagatggaagccgcacg
ccacattatggctcaatgacaccttcgcacgatccttcgcgcactccgcttcacggagga
gcctgggatcccacgcagccaaatactccagcgcgcaacgatgacttcgattacaatttt
gacacgtctaccccttcccctggggtctatggaactcccaacccagcaactccaggggga
tacggcggcccgtatactcccaatacccccggtggtgggatgtatggctcggagcccact
tactctccgtacacacagaccccatctccggccggatttggtaatcccatgacccctggg
agtattgctccaatatcaccggcatttaatccacacacccctggggccggcatggaagag
tcgcacgctgactgggtcacgactgatatcgaagtgcgaattaatgaaaaccacgaggac
cctcagttgatggacaaaaaaggcgtggtcagaactgtgtcgggaaacacgtgcaccgtg
tatctgtacgacgaaaaacgggacgtcagtgtttcaattaacaatgtggaccctggtcaa
ccagctaagcaggataaggtgaaagtcatctttggagacgatcgtgaacgcataggaact
ctgatcaacatcgacgacccggatgggattattaagatggaacagacagagcagctcaag
attctaccgctcaaatttttagctaaaattggacaaaccgtttga
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