Pocillopora damicornis (lace coral): 113672001
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Entry
113672001 CDS
T05773
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03013
Nucleocytoplasmic transport
pdam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113672001
03015 mRNA surveillance pathway
113672001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113672001
03041 Spliceosome [BR:
pdam03041
]
113672001
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113672001
Spliceosome [BR:
pdam03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
113672001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Lipase_GDSL_2
Lipase_GDSL
Motif
Other DBs
NCBI-GeneID:
113672001
NCBI-ProteinID:
XP_027044070
LinkDB
All DBs
Position
Unknown
AA seq
1333 aa
AA seq
DB search
MADAGFFRGTSAEQDNRFLDKQKKLLKSMRFDDVLNKKVDMEKVNLDIIKPWITKKLIDI
LGAEDDVVMQYVFNMLESEKSPDPKFMQINITGFLQSKNAREFMKELWTLLLSAQENIGG
IPSEFMEKKKEEIKQRKLEQERIQANLQRYQGDQQQTEPDSTATDDNVGNENGSAPASAD
ITEEFRKAKELAEQLAGKENNPKREYKKSRQDSAHSDSGESDDERASRKKSGSDARVDTS
DLTSVVEVKKEKDAEVKSPSKLLQPKWRSRLMSSAAQPVDRDKPGWDKEHQQNVALAATP
DINVVLTGDSIIKGLSRYPKIWRKYFAPLKALNFGIGGDKTQHVLWRLQNGELECDPKII
VVLCGTNNIDKNSSSEIAQGILAIVDFIRNKKPNVNIIVCGILPRDLYPSSRRNKVDDVN
EELFQYISYSEELQNENVYFLPPEKGWTVRGGELDKNLYFKDHLHLVEEGDEKLAKSITR
LVKELLKSDDTEGDSSVPNKKLIKQNEIERAEKAKKEAAENKDMKRGNSSSRSRSRSGSR
SRSRSRSRSRDRRDRTRSRDKKGRKRSRSRSSASRSRSRSYSRSRSRSRERRRRSRSRSP
RRVSSYNRGRWSPRRRRRTPSPRRWSPPRRGRSPPRRRSRSRSPRRKPRRSPSPRRRSRS
ASASSRSRSASFSSRSSRSRSKSPRADTTRSEKMEKGKEKEKEVEKEKEEQQEDDKVKSK
EKSASPEKAKSKGTPSPPPTHHRSSYKKQEQPHSPVKQPSPSSSSSASPPPPQIKQEKEV
TEEKEKSPPLPKSKKTTSRRYRKHSPSPSSSEGEWSPERKKKADSSKDRRKERERSESPR
DRRRKPRDESLSSRRRRRDDSRSPSPPRRKRREFSRSPSPRRRRQERPSSSPRRRRKAEH
SQSPSPRERRRRPEPSPPRSRERRKERIPSPPLRRRRRSSSSPPVTRRSESPQPSGRRRA
NEKDQKERRRSPEPEKVAGRRRKRSERSRSSSGSPVSPQKPQAEPDSAKKLKARQDKRSS
SSSASPEPSSAKKKTRETRESPVKSPPRDAIRGKGEGRKRSRSNSPREDARDRKRSASPR
EDSRDRKRGERKSPSMSPKRPKSRRSAQGASASPGPKTKSRTKRSASASPQPSPAKASKS
RASKRSPSSSPEREVKPRSRAAKQSSPASPETRQQSHATKRNPSASPSRERVKRKAAAKR
TSSEEKSPEPSARKARKSPSVPEEEPPRKSPSKSPPAPAKESSAEEQEKPEEKEAKGEKK
KKHKKHKKHGSSKHKHKRSKHKKHKDKDKSPGHSDSMDEDDTETLERKLREKALQSMQRH
AKSPEGQEENDDD
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctggtttctttcggggtacgagtgcagaacaggacaatcgatttcttgac
aagcaaaagaagctgttaaaatcaatgcgatttgacgacgtactcaacaaaaaggtggac
atggaaaaggtcaaccttgatataataaaaccttggataacaaagaagttgattgatata
cttggagctgaagatgatgtggttatgcagtatgtctttaacatgctagaatcagaaaag
agtccagatccaaagttcatgcaaataaatattactggctttttacaatccaaaaatgcc
cgtgaatttatgaaggagttatggactcttcttttaagtgcacaagaaaatattggtggt
attccttctgaatttatggaaaaaaagaaagaggaaatcaagcaaagaaagctggaacaa
gagcgtatccaagctaaccttcagagatatcaaggagatcagcagcaaacagagccagac
agcacagcaacagatgataatgtaggcaatgaaaatggatctgcacctgcatctgctgac
attacagaggaatttcggaaagctaaagaactggcagagcaactagcagggaaagaaaac
aacccaaaaagagagtacaagaagtccaggcaagactctgctcattctgacagtggtgag
agtgatgatgagagggcctccaggaaaaagagtgggtcagacgcaagagtagatacgtct
gaccttacatcagttgtggaagtgaaaaaggaaaaagatgcagaagtgaagtcacccagt
aaactcctccaaccaaaatggaggtctcggctcatgtcctcagctgcccagccagttgac
agagataaacctggatgggataaagagcatcagcagaatgttgccctcgcagcgacccct
gacatcaatgttgtcttgaccggggactctatcatcaaaggattgagtcgttatccaaaa
atctggagaaagtactttgccccgctgaaagcactgaactttggtattggtggtgacaaa
actcagcatgttctttggcgactccagaatggggaacttgagtgtgaccctaaaataatt
gttgtactttgtggcaccaacaacatagacaaaaacagttcaagtgaaattgcccaaggt
atattggccattgttgacttcattcggaacaaaaagcccaatgtgaacatcattgtgtgt
ggaatccttcccagggatttataccccagctcaaggcgcaacaaggttgatgatgtcaat
gaggaactgtttcagtatataagctattcagaagagctgcagaatgagaatgtgtatttc
ttaccaccagagaagggctggactgtcagaggaggtgaacttgacaaaaatctctacttt
aaagatcacttacatcttgtagaggaaggagacgagaagcttgccaaatcaatcactcgt
ttggtgaaagagcttcttaaatctgatgatacagaaggagacagttctgttcctaacaaa
aagctcattaagcaaaatgaaattgaaagagctgaaaaggccaagaaagaggctgctgaa
aacaaagatatgaaaagaggaaactctagttcacgttcgcggtcacgttcaggatcacgc
tctcgatcacgttcacgttctcgctcaagagacagaagagacagaacacggtcaagagac
aagaaaggacgtaagcgtagtcggtccaggtcctcagcttctcggtcacgttcccggtcg
tactcaagatcacgatcacgcagtcgggaaaggcggagaaggtctcgttctcgctcgccc
cgtcgtgtttcttcgtacaacagaggtcgatggtcacctcgcagacgccgtagaacgcct
tccccaaggaggtggtcgccacctagaaggggaagatcaccaccacgtagaaggtctcgc
tctcgttcgccgcgcaggaagccacgtcgatccccatctcctcgccgccgatcacgctca
gcctcagcgtcatcacggtcacgttctgcaagtttcagctcacgatcgtcacgctcacgc
tcaaaatcacctcgagccgacacaacacgatcagagaaaatggaaaagggtaaagaaaag
gaaaaggaggttgagaaggaaaaagaagaacagcaagaagacgataaagttaaatcaaag
gaaaagtcggccagtccggaaaaagcgaaatcaaagggtactcccagccctccaccgacg
catcatcgatcatcctacaaaaagcaggaacagcctcattcaccggtcaaacagccctcc
ccgtcctcgtcatcctctgcctcgccaccaccccctcagatcaaacaagagaaagaagtc
acggaagagaaagagaagtcgccgcctttaccaaaatccaagaaaacgacaagccgccgc
taccgcaaacactcgccgtcaccatcctcgtctgaaggagagtggtcgccagagaggaag
aagaaagctgactcctctaaagatcggagaaaggaacgagaacgaagtgagtcaccaagg
gatcggcgaagaaagccccgagatgagtcactttcctccagacgaagaaggagagacgat
tcacgctcgccctccccacccagacgaaaaagaagagagttttcccgttcgccttctccc
cgaagacggcgccaagagagaccttcttcttctcctcgaaggaggagaaaagcagaacat
tcgcaatcaccatctcccagggaaaggcgacgacgacctgagccatcgccgccacgaagt
agagagcgtagaaaggaaagaataccttccccgccactgcgaagacgccgtcggtcaagt
tcgtcacctcctgtaactcgtcggtcagaatcgccacaaccatcgggtcgtcgtcgtgcc
aacgaaaaagatcaaaaagagcgtcgccgctctccagaaccagagaaagtagctggtcgg
agacgaaagcgctcggagaggtctcggtcttcttcaggctcgccagtgtcaccacagaag
ccacaggccgaacctgattcagcgaagaagttaaaagctcgtcaagataaacgatcatct
tcttcgtctgcttcccccgagccgtcatcggctaagaaaaagacgcgtgagactcgagag
tctcccgtcaagtctcctccaagggacgcaattcgaggaaaaggagagggaagaaaacga
tcaaggtcgaactcgcctcgcgaggatgctcgggatcggaaacgttcggcttctcctcga
gaagattctcgtgataggaaacgaggtgaaagaaagtcgccgtccatgtcacccaagagg
cccaaaagtcggagatcagcacaaggtgcctctgcttcgcctggccccaaaaccaaatct
cgtacaaagcgttctgcttcagcctcgccccagccctcacccgcgaaggcttcaaagtca
cgcgcctcaaagagatcgccgtcatcttctcctgaacgggaagtcaaacctagatctcgc
gctgccaagcaatcctcgcctgcctcacccgaaactcgtcagcaatcgcacgcgaccaag
aggaatccttcggcatccccatcacgtgaacgggtcaaacggaaagcggcagccaagagg
acctctagcgaggaaaaatcccccgagccctcagcaagaaaggcccgaaaaagcccctca
gtgccggaagaagagccgccgagaaagtctcctagcaagtcccctcctgctcctgctaag
gaaagctctgctgaggaacaagagaaaccagaggaaaaggaagcaaaaggtgaaaagaaa
aagaaacataagaaacacaagaaacatgggagctcgaaacacaaacataagcgttcaaaa
cacaagaaacacaaagacaaggacaagtcacctgggcactcggatagcatggacgaagat
gacacagaaaccttggagaggaagctaagagagaaggctcttcaatcgatgcagagacac
gccaaatcaccggaaggacaggaggagaacgacgacgattga
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